Factsheet for VIT_01s0127g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00520.t01	Wine grape	cytosol	87.78	88.25
VIT_01s0127g00540.t01	Wine grape	mitochondrion	23.21	85.26
VIT_01s0127g00560.t01	Wine grape	cytosol	84.12	84.27
KRH45656	Soybean	cytosol, nucleus	66.32	66.67
VIT_01s0127g00600.t01	Wine grape	cytosol	69.28	66.17
PGSC0003DMT400079611	Potato	cytosol	65.79	65.34
CDY60573	Canola	cytosol	63.87	63.32
Bra031513.1-P	Field mustard	cytosol	63.53	62.98
CDY24527	Canola	cytosol	63.35	62.8
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	62.83	62.28
Solyc05g005460.2.1	Tomato	cytosol	62.48	61.62
GSMUA_Achr3P10290_001	Banana	cytosol	63.0	61.08
TraesCS2B01G489600.3	Wheat	cytosol	54.45	55.91
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	54.97	54.59
Os03t0405500-01	Rice	plasma membrane	54.1	54.48
Zm00001d029457_P001	Maize	extracellular	54.1	54.48
HORVU2Hr1G103310.2	Barley	cytosol	54.8	54.42
TraesCS2A01G466800.1	Wheat	cytosol	49.56	54.2
EER94707	Sorghum	cytosol	54.8	53.77
Os03t0405900-01	Rice	cytosol, plastid	53.23	52.5
Zm00001d029459_P001	Maize	cytosol	50.26	49.66
OQU92417	Sorghum	cytosol	48.17	47.1
VIT_04s0008g02900.t01	Wine grape	cytosol	28.1	40.35
VIT_18s0001g01030.t01	Wine grape	cytosol	28.45	38.35
VIT_01s0127g00530.t01	Wine grape	cytosol	34.9	24.78

Protein Annotations

MapMan:10.6.3	EntrezGene:100852797	wikigene:100852797	Gene3D:3.40.30.10	ProteinID:CCB51783	ProteinID:CCB51783.1
InterPro:DC1	UniProt:F6HHU6	EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100852797	wikigene:LOC100852797
PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85
SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI00015CCADE	ArrayExpress:VIT_01s0127g00590	EnsemblPlantsGene:VIT_01s0127g00590	EnsemblPlants:VIT_01s0127g00590.t01	unigene:Vvi.9009	RefSeq:XP_003631262
RefSeq:XP_003631262.1	RefSeq:XP_019075743.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:7943139..7945596

Molecular Weight (calculated)

65188.8 Da

IEP (calculated)

5.686

GRAVY (calculated)

-0.369

Length

573 amino acids

Sequence
(BLAST)

001: MATDKIDGVS HDLVLLLTSE DRDFLVRNNG HQVKVESLKG KKIWLYFSAS WCGPCRQFTP KLVEVYDEFS SKGDFEIIFV SLDKGDQLFN EYFSKMPWLA
101: IPFSDSDTRD HLKKLFKMRG IPSLAMLDES GKVLSSEGVE IIKDYGVEGY PFTAEKIKEL KEKEETAKKE QSLRSILVSQ SRDYVISADG RKVSVSELEG
201: KLVGLYFSLS SYNACQEFTT TLAEVYEELR AKGESFEIVM ISLDDEEQSF KKYFESMPWF ALPFNDKSCG KLARYFKLRV LPTLVVIGQD GKTLHSNVAE
301: AIEQHGIQAY PFTPEKFVEL EEIEKAKREA QTLESILVSG DTDFVIGKDG VKIPVSHLAG KNILLYFSAH WCPPCRAFLP KLIEAYQNIK AKDEAFEVIF
401: ISSDRDQASF DEFFSGMPWL ALPFGDKRKA SLGRTFKVRS IPKLIAVEPT GRTVTTEARN LVMIHGADAY PFTDEHIKEI EARYEEMAKG WPAKVKHALH
501: EQHELVLTKH RMYRCNGCEK EGHLWSFYCA ECDFDLHPKC ALDEDKGIKD DNKLEKAKPG EGWKCDGEVC SRA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.