Factsheet for VIT_05s0102g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00470.t01	Wine grape	cytosol	49.76	51.78
VIT_00s0269g00010.t01	Wine grape	nucleus	35.61	45.91
VIT_00s0174g00130.t01	Wine grape	cytosol	44.39	44.39
VIT_00s0174g00120.t01	Wine grape	nucleus	44.39	36.55
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	29.76	35.26
VIT_00s0174g00090.t01	Wine grape	cytosol	29.76	33.15
VIT_05s0102g00690.t01	Wine grape	cytosol	37.56	28.84
VIT_05s0102g00400.t01	Wine grape	nucleus	15.61	12.96
VIT_05s0102g00440.t01	Wine grape	cytosol	14.63	12.2
VIT_05s0102g00410.t01	Wine grape	cytosol	9.76	10.36
VIT_00s0174g00140.t01	Wine grape	cytosol	12.2	9.92
VIT_18s0001g06550.t01	Wine grape	cytosol	9.76	8.37
VIT_18s0001g06680.t01	Wine grape	cytosol	8.78	5.1
VIT_18s0117g00390.t01	Wine grape	nucleus	13.66	4.09
VIT_18s0117g00140.t01	Wine grape	nucleus	12.2	4.01

Protein Annotations

EntrezGene:100256137	wikigene:100256137	EntrezGene:100853873	MapMan:15.5.46	ProteinID:CCB59835	ProteinID:CCB59835.1
ncoils:Coil	UniProt:F6HYS1	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN596500	GO:GO:0003674
GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010018	GO:GO:0042753
GO:GO:0045893	EntrezGene:LOC100256137	wikigene:LOC100256137	PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF46
UniParc:UPI00015CC527	ArrayExpress:VIT_05s0102g00390	EnsemblPlantsGene:VIT_05s0102g00390	EnsemblPlants:VIT_05s0102g00390.t01	unigene:Vvi.5015	RefSeq:XP_002265011
RefSeq:XP_002265011.2	RefSeq:XP_003632074	RefSeq:XP_003632074.1	RefSeq:XP_003632074.2	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:22363094..22367949

Molecular Weight (calculated)

23691.1 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.804

Length

205 amino acids

Sequence
(BLAST)

001: METLIEDKVV TTESSAGGES GLCEVDTNQE PYEGLLFESE EAARAFYEEY ARRVGFLTRI ISSRKSERDG SIISRRLACN KEGFNLNSQK TGRVRIRKRE
101: SKREGCMAMI LVKREKLGKW VVTKFVREHN HPLVISSGNS RPTPDEKDRK IRELSSELHR ANQRLAACRE QLRTFMTYIE EHTQSLSRTV ENVVHNIREI
201: ESEDQ

Best Arabidopsis Sequence Match ( AT2G43280.1 )
(BLAST)

001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.