Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0269g00040.t01 | Wine grape | cytosol, extracellular, nucleus | 93.48 | 99.42 |
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 33.7 | 30.24 |
| VIT_05s0102g00390.t01 | Wine grape | nucleus | 33.15 | 29.76 |
| VIT_00s0269g00010.t01 | Wine grape | nucleus | 25.54 | 29.56 |
| VIT_00s0174g00120.t01 | Wine grape | nucleus | 38.59 | 28.51 |
| VIT_05s0102g00470.t01 | Wine grape | cytosol | 30.43 | 28.43 |
| VIT_05s0102g00690.t01 | Wine grape | cytosol | 34.78 | 23.97 |
| VIT_05s0102g00410.t01 | Wine grape | cytosol | 13.59 | 12.95 |
| VIT_05s0102g00400.t01 | Wine grape | nucleus | 15.22 | 11.34 |
| VIT_05s0102g00440.t01 | Wine grape | cytosol | 14.13 | 10.57 |
| VIT_00s0174g00140.t01 | Wine grape | cytosol | 14.13 | 10.32 |
| VIT_18s0001g06550.t01 | Wine grape | cytosol | 13.04 | 10.04 |
| VIT_18s0001g06680.t01 | Wine grape | cytosol | 12.5 | 6.52 |
| VIT_18s0117g00140.t01 | Wine grape | nucleus | 15.76 | 4.65 |
| VIT_18s0117g00390.t01 | Wine grape | nucleus | 11.96 | 3.22 |
Protein Annotations
| EntrezGene:100265314 | wikigene:100265314 | MapMan:15.5.46 | EMBL:AM458786 | ProteinID:CAN81121 | ProteinID:CAN81121.1 |
| ProteinID:CCB60933 | ProteinID:CCB60933.1 | UniProt:F6I1W6 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | EMBL:FN596519 |
| GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100265314 | wikigene:LOC100265314 | PFAM:PF03101 |
| PANTHER:PTHR31669 | PANTHER:PTHR31669:SF71 | UniParc:UPI000210862C | ArrayExpress:VIT_00s0174g00090 | EnsemblPlantsGene:VIT_00s0174g00090 | EnsemblPlants:VIT_00s0174g00090.t01 |
| RefSeq:XP_002270450 | RefSeq:XP_002270450.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:+:6888061..6888766
Molecular Weight (calculated)
20942.9 Da
IEP (calculated)
6.766
GRAVY (calculated)
-0.585
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDNYGATIA DCVDSKSIET SNREMLDLYD DEDDDENDRE FIVNELDGTV DPYVGMEFES EEAAMVYYDA YAKRVGFIIR VGNCHRSGRD GSVISRRFLC
101: NKEGFRVSNK KMKRLEVRKP REITREGCRA MIMVRKDKSG KWIVTKLETE HCHPLGIPTG KGRRGSVQAR PQVSLLLYSV FSAV
101: NKEGFRVSNK KMKRLEVRKP REITREGCRA MIMVRKDKSG KWIVTKLETE HCHPLGIPTG KGRRGSVQAR PQVSLLLYSV FSAV
001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.