Factsheet for VIT_05s0102g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23208	Soybean	nucleus	67.36	50.78
KRH10133	Soybean	nucleus	66.32	46.89
VIT_00s0174g00140.t01	Wine grape	cytosol	54.4	41.67
VIT_05s0102g00400.t01	Wine grape	nucleus	43.01	33.6
VIT_05s0102g00440.t01	Wine grape	cytosol	41.97	32.93
VIT_18s0001g06550.t01	Wine grape	cytosol	22.28	17.99
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	12.95	14.45
VIT_00s0174g00090.t01	Wine grape	cytosol	12.95	13.59
VIT_00s0174g00130.t01	Wine grape	cytosol	13.99	13.17
VIT_18s0001g06680.t01	Wine grape	cytosol	23.83	13.03
GSMUA_Achr5P14700_001	Banana	cytosol	29.53	12.61
VIT_05s0102g00470.t01	Wine grape	cytosol	10.88	10.66
VIT_00s0174g00120.t01	Wine grape	nucleus	12.95	10.04
VIT_05s0102g00390.t01	Wine grape	nucleus	10.36	9.76
VIT_05s0102g00690.t01	Wine grape	cytosol	12.95	9.36
KXG39753	Sorghum	cytosol	29.53	8.14
Zm00001d028472_P001	Maize	nucleus	28.5	8.03
TraesCS4B01G220300.2	Wheat	nucleus	27.98	7.92
HORVU4Hr1G062460.2	Barley	nucleus	27.46	7.9
VIT_18s0117g00140.t01	Wine grape	nucleus	25.39	7.87
TraesCS4A01G083800.1	Wheat	nucleus	27.98	7.8
TraesCS4D01G220600.2	Wheat	cytosol, nucleus	27.98	7.68
Os03t0255400-01	Rice	nucleus	27.46	7.59
VIT_18s0117g00390.t01	Wine grape	nucleus	22.8	6.43
GSMUA_Achr2P10090_001	Banana	nucleus	12.44	3.95
VIT_00s0269g00010.t01	Wine grape	nucleus	3.11	3.77

Protein Annotations

EntrezGene:100245844	wikigene:100245844	MapMan:15.5.46	ProteinID:CCB59837	ProteinID:CCB59837.1	UniProt:F6HYS3
InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN596500	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100245844	wikigene:LOC100245844	PFAM:PF03101
PANTHER:PTHR31669	PANTHER:PTHR31669:SF83	UniParc:UPI000210A24D	ArrayExpress:VIT_05s0102g00410	EnsemblPlantsGene:VIT_05s0102g00410	EnsemblPlants:VIT_05s0102g00410.t01
RefSeq:XP_002265090	RefSeq:XP_002265090.2	:	:	:	:

Description

No Description!

Coordinates

chr5:+:22383436..22384647

Molecular Weight (calculated)

22299.4 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.724

Length

193 amino acids

Sequence
(BLAST)

001: MENPSSLGFD SDESDPDMQA EAYEDHERIE DKLPNNLDLC AGEDDKIVEQ SVINREVLEP YIGMEFNSRD EAREFYVAYG RRTGFTVRIH HNRRSRVNNQ
101: VIGQDFVCSK EGFRAKKYVY RKDRVLPPPP ITREGCQAMI RLALRDGAKW VVTKFVKEHS HKLMSPSKVP WRGSGKHLVS EVMHFTLGST HYV

Best Arabidopsis Sequence Match ( AT3G59470.1 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.