Factsheet for VIT_00s0269g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0174g00090.t01	Wine grape	cytosol	99.42	93.48
VIT_05s0102g00390.t01	Wine grape	nucleus	35.26	29.76
VIT_00s0174g00130.t01	Wine grape	cytosol	34.68	29.27
VIT_00s0269g00010.t01	Wine grape	nucleus	26.59	28.93
VIT_00s0174g00120.t01	Wine grape	nucleus	40.46	28.11
VIT_05s0102g00470.t01	Wine grape	cytosol	31.79	27.92
VIT_05s0102g00690.t01	Wine grape	cytosol	36.99	23.97
VIT_05s0102g00410.t01	Wine grape	cytosol	14.45	12.95
VIT_05s0102g00400.t01	Wine grape	nucleus	16.18	11.34
VIT_05s0102g00440.t01	Wine grape	cytosol	15.03	10.57
VIT_00s0174g00140.t01	Wine grape	cytosol	15.03	10.32
VIT_18s0001g06550.t01	Wine grape	cytosol	13.87	10.04
VIT_18s0001g06680.t01	Wine grape	cytosol	13.29	6.52
VIT_18s0117g00140.t01	Wine grape	nucleus	16.18	4.49
VIT_18s0117g00390.t01	Wine grape	nucleus	12.72	3.22

Protein Annotations

EntrezGene:100265314	wikigene:100265314	EntrezGene:100852466	wikigene:100852466	MapMan:15.5.46	EMBL:AM458786
ProteinID:CAN81121	ProteinID:CAN81121.1	ProteinID:CCB59127	ProteinID:CCB59127.1	UniProt:F6HWR3	InterPro:FAR1_DNA_bnd_dom
InterPro:FHY3/FAR1	EMBL:FN596280	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100265314	wikigene:LOC100265314	EntrezGene:LOC100852466	wikigene:LOC100852466
PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI0002109C85	ArrayExpress:VIT_00s0269g00040	EnsemblPlantsGene:VIT_00s0269g00040
EnsemblPlants:VIT_00s0269g00040.t01	RefSeq:XP_002270450	RefSeq:XP_002270450.2	RefSeq:XP_003634984	RefSeq:XP_003634984.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:19745793..19746498

Molecular Weight (calculated)

19750.4 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.771

Length

173 amino acids

Sequence
(BLAST)

001: MGDNYGATIA DCVDSKSIET SNREMLDLYD DEDDDENDRE FIVNELDGTV DPYVGMEFES EEAAMVYYDA YAKRVGFIIR VGNCHRSGRD GSVISRRFLC
101: NKEGFRVSNK KMKRLEVRKP REITREGCRA MIMVRKDKSG KWIVTKLETE HCHPLGIPTG KGRRGSVQAR PQS

Best Arabidopsis Sequence Match ( AT3G07500.1 )
(BLAST)

001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.