Factsheet for VIT_00s0174g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00410.t01	Wine grape	cytosol	41.67	54.4
VIT_05s0102g00400.t01	Wine grape	nucleus	44.44	45.34
VIT_05s0102g00440.t01	Wine grape	cytosol	41.27	42.28
VIT_18s0001g06550.t01	Wine grape	cytosol	18.65	19.67
GSMUA_Achr5P14700_001	Banana	cytosol	28.97	16.15
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	10.32	15.03
VIT_00s0174g00090.t01	Wine grape	cytosol	10.32	14.13
VIT_00s0174g00130.t01	Wine grape	cytosol	10.71	13.17
VIT_18s0001g06680.t01	Wine grape	cytosol	17.86	12.75
VIT_05s0102g00390.t01	Wine grape	nucleus	9.92	12.2
VIT_00s0174g00120.t01	Wine grape	nucleus	11.51	11.65
VIT_05s0102g00470.t01	Wine grape	cytosol	8.73	11.17
VIT_05s0102g00690.t01	Wine grape	cytosol	11.51	10.86
HORVU4Hr1G062460.2	Barley	nucleus	25.4	9.54
TraesCS4B01G220300.2	Wheat	nucleus	25.0	9.24
TraesCS4A01G083800.1	Wheat	nucleus	25.0	9.1
Os03t0255400-01	Rice	nucleus	25.0	9.03
KXG39753	Sorghum	cytosol	25.0	9.0
TraesCS4D01G220600.2	Wheat	cytosol, nucleus	25.0	8.96
Zm00001d028472_P001	Maize	nucleus	24.21	8.91
VIT_18s0117g00140.t01	Wine grape	nucleus	19.84	8.03
VIT_18s0117g00390.t01	Wine grape	nucleus	20.24	7.46
VIT_00s0269g00010.t01	Wine grape	nucleus	3.57	5.66
GSMUA_Achr2P10090_001	Banana	nucleus	9.13	3.78

Protein Annotations

EntrezGene:100248330	wikigene:100248330	EntrezGene:104877318	MapMan:15.5.46	EMBL:AM458786	ProteinID:CAN81118
ProteinID:CAN81118.1	ProteinID:CCB60938	ProteinID:CCB60938.1	UniProt:F6I1X1	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EMBL:FN596519	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010018	GO:GO:0042753	GO:GO:0045893	EntrezGene:LOC100248330	wikigene:LOC100248330	PFAM:PF03101
PANTHER:PTHR31669	PANTHER:PTHR31669:SF83	UniParc:UPI000210862F	ArrayExpress:VIT_00s0174g00140	EnsemblPlantsGene:VIT_00s0174g00140	EnsemblPlants:VIT_00s0174g00140.t01
RefSeq:XP_002270370	RefSeq:XP_002270370.2	RefSeq:XP_010646073.1	RefSeq:XP_010646074.1	RefSeq:XP_019073550.1	RefSeq:XP_019073551.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:6919600..6924542

Molecular Weight (calculated)

29155.2 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.923

Length

252 amino acids

Sequence
(BLAST)

001: MMESTSSQAI DSDEGDRCLQ VESYNEHELA DDEPSTNGNL HIGGEDKTLA QSVASPHSIG NNVEPYVGME FKSREDAREF YIAYGRHTGF TVRIHHNRRS
101: RINNNVIGQD FVCSREGFRE KKYIYRKDRI LPPPPVTREG CPAMLRVAIR DGPKWVITKF VKEHNHKLMS PSKVPWRGSG KNFVSEDEKD QRIQELTLEL
201: YNERQKCKRL CAAYQEQLRL VLKDIEEHTD HLSRGVEDAV QKVRDLENEH PH

Best Arabidopsis Sequence Match ( AT3G07500.1 )
(BLAST)

001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.