Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g06680.t01 | Wine grape | cytosol | 72.38 | 49.01 |
| VIT_05s0102g00410.t01 | Wine grape | cytosol | 17.99 | 22.28 |
| VIT_05s0102g00440.t01 | Wine grape | cytosol | 19.67 | 19.11 |
| VIT_00s0174g00140.t01 | Wine grape | cytosol | 19.67 | 18.65 |
| VIT_05s0102g00400.t01 | Wine grape | nucleus | 17.57 | 17.0 |
| VIT_00s0269g00040.t01 | Wine grape | cytosol, extracellular, nucleus | 10.04 | 13.87 |
| VIT_00s0174g00090.t01 | Wine grape | cytosol | 10.04 | 13.04 |
| VIT_18s0117g00390.t01 | Wine grape | nucleus | 33.05 | 11.55 |
| VIT_18s0117g00140.t01 | Wine grape | nucleus | 29.29 | 11.24 |
| VIT_05s0102g00390.t01 | Wine grape | nucleus | 8.37 | 9.76 |
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 8.37 | 9.76 |
| VIT_05s0102g00470.t01 | Wine grape | cytosol | 7.95 | 9.64 |
| VIT_00s0174g00120.t01 | Wine grape | nucleus | 8.79 | 8.43 |
| VIT_05s0102g00690.t01 | Wine grape | cytosol | 8.79 | 7.87 |
| VIT_00s0269g00010.t01 | Wine grape | nucleus | 1.67 | 2.52 |
| PGSC0003DMT400028524 | Potato | cytosol | 0.42 | 0.81 |
| Solyc06g073200.2.1 | Tomato | cytosol | 0.42 | 0.8 |
Protein Annotations
| ArrayExpress:VIT_18s0001g06550 | EMBL:FN595996 | EnsemblPlants:VIT_18s0001g06550.t01 | EnsemblPlantsGene:VIT_18s0001g06550 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF71 | PFAM:PF03101 |
| ProteinID:CBI31349 | ProteinID:CBI31349.3 | UniParc:UPI0001BE34A4 | UniProt:D7TLH6 | MapMan:15.5.46 | : |
Description
No Description!
Coordinates
chr18_random:-:4932486..4934036
Molecular Weight (calculated)
27165.0 Da
IEP (calculated)
8.063
GRAVY (calculated)
-0.641
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIEPYHLGR YSSIGSRPDV WGAIQESDDL VNHHRVGGSF RGLTIQDELN FDSWWSSFYS GETEMAINVN GDEIGTLVNV NEKNPEDDDQ IPRRGMAFSS
101: ELEAEEFCKK YAKRIGFTVR KGKVQRKANG TLKGRCFLCS CEGFRTKKHP NQGTKYKRSE TRTGCNVQIQ VKLDNGQWVI TKLHLEHNHR LQCLDTLNWP
201: SDEVEGASGA DKVCQNFQLK LPKYFSLGTF TSKLIFFVG
101: ELEAEEFCKK YAKRIGFTVR KGKVQRKANG TLKGRCFLCS CEGFRTKKHP NQGTKYKRSE TRTGCNVQIQ VKLDNGQWVI TKLHLEHNHR LQCLDTLNWP
201: SDEVEGASGA DKVCQNFQLK LPKYFSLGTF TSKLIFFVG
001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.