Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073200.2.1 | Tomato | cytosol | 30.65 | 30.4 |
| PGSC0003DMT400069493 | Potato | nucleus | 33.06 | 18.89 |
| PGSC0003DMT400069495 | Potato | nucleus | 32.26 | 15.94 |
| VIT_18s0117g00140.t01 | Wine grape | nucleus | 3.23 | 0.64 |
| VIT_18s0001g06550.t01 | Wine grape | cytosol | 0.81 | 0.42 |
| VIT_18s0117g00390.t01 | Wine grape | nucleus | 1.61 | 0.29 |
| VIT_18s0001g06680.t01 | Wine grape | cytosol | 0.81 | 0.28 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028524 | EnsemblPlantsGene:PGSC0003DMG400010984 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | ncoils:Coil | PANTHER:PTHR31669 |
| PANTHER:PTHR31669:SF80 | PFAM:PF03101 | PGSC:PGSC0003DMG400010984 | UniParc:UPI000296246E | UniProt:M1AR94 | MapMan:35.2 |
Description
FAR1; Polynucleotidyl transferase, Ribonuclease H fold [Source:PGSC_GENE;Acc:PGSC0003DMG400010984]
Coordinates
chr9:-:27298498..27302176
Molecular Weight (calculated)
14474.5 Da
IEP (calculated)
9.263
GRAVY (calculated)
-0.851
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNHYGPPRK ARTSRREGCK AMMWVEVNKF DKLAVTRFVK EHTHPLVPSG CSSGNAMDKK DRRIQELSME LERQDKLCDL YREQLVTFLE NVEQQMELLS
101: KKIQVAVNNI KEVEAEVQKQ PNSQ
101: KKIQVAVNNI KEVEAEVQKQ PNSQ
001: MFYDDYSRRL GFVMRVMSCR RSEKDGRILA RRFGCNKEGH CVSIRGKFGS VRKPRPSTRE GCKAMIHVKY DRSGKWVITK FVKEHNHPLV VSPREARHTL
101: DEKDKRIQEL TIELRNKKRL CAAYKEQLDA FAKIVEEHSN QIAKKVENVV NNLKEFEHLE HALLRSKQDA I
101: DEKDKRIQEL TIELRNKKRL CAAYKEQLDA FAKIVEEHSN QIAKKVENVV NNLKEFEHLE HALLRSKQDA I
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.