Factsheet for VIT_18s0117g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g06550.t01	Wine grape	cytosol	11.55	33.05
VIT_18s0117g00140.t01	Wine grape	nucleus	25.29	27.77
VIT_05s0102g00410.t01	Wine grape	cytosol	6.43	22.8
VIT_05s0102g00400.t01	Wine grape	nucleus	8.04	22.27
VIT_18s0001g06680.t01	Wine grape	cytosol	11.11	21.53
VIT_05s0102g00440.t01	Wine grape	cytosol	7.46	20.73
VIT_00s0174g00140.t01	Wine grape	cytosol	7.46	20.24
VIT_05s0102g00470.t01	Wine grape	cytosol	3.95	13.71
VIT_05s0102g00390.t01	Wine grape	nucleus	4.09	13.66
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	3.22	12.72
VIT_00s0174g00090.t01	Wine grape	cytosol	3.22	11.96
VIT_00s0174g00130.t01	Wine grape	cytosol	3.36	11.22
VIT_00s0174g00120.t01	Wine grape	nucleus	3.8	10.44
VIT_05s0102g00690.t01	Wine grape	cytosol	3.65	9.36
VIT_00s0269g00010.t01	Wine grape	nucleus	1.32	5.66
Solyc06g073200.2.1	Tomato	cytosol	1.02	5.6
PGSC0003DMT400028524	Potato	cytosol	0.29	1.61

Protein Annotations

MapMan:15.5.46	EMBL:AM465464	ProteinID:CAN83430	ProteinID:CAN83430.1	ProteinID:CCB45108	ProteinID:CCB45108.1
ncoils:Coil	UniProt:F6GYS2	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN594973	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	PFAM:PF03101
PFAM:PF05278	InterPro:PLipase-like	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI000210A038	ArrayExpress:VIT_18s0117g00390
EnsemblPlantsGene:VIT_18s0117g00390	EnsemblPlants:VIT_18s0117g00390.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:23755966..23759271

Molecular Weight (calculated)

76028.9 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.505

Length

684 amino acids

Sequence
(BLAST)

001: MERSDPPDPC KSTGSEPLVL LSENSYNSLT EGGWKASGYA HPIEERGSMP PAEFDRDITF NSTGIYSSCG SRPDVSGAVY IYMKVTKDDD MDEVESPVRL
101: DGEEPEVDCQ IPLKGMVFMS EMDAEKFYYH YAEKIGFKVR KGKVQRLSNG DIKRRFFLCS CEGFRAKNQS NQTKNKYQRK ETRTGCNAHV QVTLENGQWV
201: ITELHLEHNH DLESRNQRSN KNILDRDKLR LGVFSRNIRS KHVFEPVESQ VTDSKRAEEE GLSKVHTPSI LDEAEDVDQT IRDANNAAGV VHIMAAESFE
301: GQKTRQAEAW KPTSTTQALE KGKKLPPLHP KKVFIPPQPQ EEKEDTMSSN LPDWVFTHGN EEVEVKGTED VLQHTANDVE NISNDGILVK DRVSELPPTS
401: AVHVSIPLPQ SFVELLTPFS PSRAPVPLTT LTSAPEKPIL SSFSTVGSDS SPTIISSHEL QGRRAPPAVQ NPTLPISTMT NASTLVPGSS NLQPPPQAEH
501: QGIIRDEGSI PQIGPHALAV SLAWIRETSI QVQGPGFSPA GYSILEQIFT KYGDITADCC FTAPQFRAQF LASIVKIVQL MQQHTARELS DADISFICST
601: LSDLERAQVK VDWLRTQFVT VGPLIHYAQA EAKRAMMLTR LSAMKVEMAQ LEHELDQSEA ILRGLKDQMP DWLGIEDKLG KGLL

Best Arabidopsis Sequence Match ( AT3G59470.1 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.