Factsheet for VIT_05s0102g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069495	Potato	nucleus	60.3	64.14
KRH24623	Soybean	nucleus	61.8	62.74
Bra003377.1-P	Field mustard	nucleus	55.06	62.03
CDX67797	Canola	nucleus	55.06	62.03
CDX98376	Canola	nucleus	54.68	61.6
KRH10126	Soybean	nucleus	65.54	59.52
KRH29624	Soybean	nucleus	62.17	56.27
CDY69788	Canola	nucleus	54.68	54.89
AT3G59470.2	Thale cress	cytosol	53.93	54.75
CDY06001	Canola	nucleus	54.68	52.14
VIT_00s0269g00010.t01	Wine grape	nucleus	26.22	44.03
VIT_05s0102g00470.t01	Wine grape	cytosol	28.46	38.58
VIT_05s0102g00390.t01	Wine grape	nucleus	28.84	37.56
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	23.97	36.99
VIT_00s0174g00120.t01	Wine grape	nucleus	34.46	36.95
VIT_00s0174g00130.t01	Wine grape	cytosol	28.09	36.59
VIT_00s0174g00090.t01	Wine grape	cytosol	23.97	34.78
VIT_05s0102g00440.t01	Wine grape	cytosol	11.98	13.01
VIT_05s0102g00410.t01	Wine grape	cytosol	9.36	12.95
VIT_05s0102g00400.t01	Wine grape	nucleus	10.86	11.74
VIT_00s0174g00140.t01	Wine grape	cytosol	10.86	11.51
VIT_18s0001g06550.t01	Wine grape	cytosol	7.87	8.79
VIT_18s0001g06680.t01	Wine grape	cytosol	8.61	6.52
VIT_18s0117g00390.t01	Wine grape	nucleus	9.36	3.65
VIT_18s0117g00140.t01	Wine grape	nucleus	7.87	3.37

Protein Annotations

EntrezGene:100250990	wikigene:100250990	MapMan:15.5.46	ProteinID:CBI36687	ProteinID:CBI36687.3	ncoils:Coil
UniProt:D7U1S1	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN596500	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010018	GO:GO:0042753	GO:GO:0045893
EntrezGene:LOC100250990	wikigene:LOC100250990	PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI0001BE48DE
ArrayExpress:VIT_05s0102g00690	EnsemblPlantsGene:VIT_05s0102g00690	EnsemblPlants:VIT_05s0102g00690.t01	RefSeq:XP_002267960	RefSeq:XP_002267960.1	SEG:seg

Description

No Description!

Coordinates

chr5:-:22582208..22588193

Molecular Weight (calculated)

30497.0 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.745

Length

267 amino acids

Sequence
(BLAST)

001: MIGSEYKKTI SLCDRQNSPN FMDFGVGGDA NGEVVVRSSV DMVRTSDESE MGGNSVEVAF QSSEDNKLNQ DSSGTEIIPV VEPYVDEPYV GQEFESEAAA
101: HAFYNAYATR VGFIIRVSKL SRSRRDGSAI GRALVCNKEG YRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF VKEHTHTLTP GKGRRDLIYD
201: QYPNEHDKIR ELSQQLAVEK KRAATYKRHL EMVFEYIEEH NESLSKKIQH IVDSVRDMEN KEKQNHR

Best Arabidopsis Sequence Match ( AT3G59470.3 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.