Factsheet for VIT_18s0001g06680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g06550.t01	Wine grape	cytosol	49.01	72.38
VIT_05s0102g00410.t01	Wine grape	cytosol	13.03	23.83
VIT_05s0102g00440.t01	Wine grape	cytosol	13.03	18.7
VIT_05s0102g00400.t01	Wine grape	nucleus	13.03	18.62
VIT_00s0174g00140.t01	Wine grape	cytosol	12.75	17.86
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	6.52	13.29
VIT_00s0174g00090.t01	Wine grape	cytosol	6.52	12.5
VIT_18s0117g00140.t01	Wine grape	nucleus	20.96	11.88
VIT_00s0174g00130.t01	Wine grape	cytosol	6.52	11.22
VIT_18s0117g00390.t01	Wine grape	nucleus	21.53	11.11
VIT_05s0102g00470.t01	Wine grape	cytosol	5.38	9.64
VIT_00s0174g00120.t01	Wine grape	nucleus	6.23	8.84
VIT_05s0102g00390.t01	Wine grape	nucleus	5.1	8.78
VIT_05s0102g00690.t01	Wine grape	cytosol	6.52	8.61
VIT_00s0269g00010.t01	Wine grape	nucleus	1.13	2.52
PGSC0003DMT400028524	Potato	cytosol	0.28	0.81
Solyc06g073200.2.1	Tomato	cytosol	0.28	0.8

Protein Annotations

MapMan:15.5.46	ProteinID:CCB56102	ProteinID:CCB56102.1	UniProt:F6HN47	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EMBL:FN595996	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	PFAM:PF03101
PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI0002109358	ArrayExpress:VIT_18s0001g06680	EnsemblPlantsGene:VIT_18s0001g06680	EnsemblPlants:VIT_18s0001g06680.t01

Description

No Description!

Coordinates

chr18_random:-:5024019..5027889

Molecular Weight (calculated)

40182.7 Da

IEP (calculated)

9.239

GRAVY (calculated)

-0.792

Length

353 amino acids

Sequence
(BLAST)

001: MEIKAKYLPT SDGLRLTTEE YDQLMAMIQK NNDVKALKEI KQGKRAPKAP TWPRNGDLDH LVKAQWVGIW ERKQSKQGKR TLSHTAGCES HKRSLGLGRR
101: DPKHLRVLHQ PEAKQSSTDP LDPHPSTAPE CLSNPIILQE SDDLVNHNRV GGTFRRLTIQ DELNFDSWWS SFYSGETEMA INVNGDEIGT LVNVNEKNPE
201: DDDQIPRRGM AFSSELEAEE FCKKYAKRIG FTVRKGKVQR KANGTLKGRC FLCSCEGFRT KKHPNQGTKY QRSETRTGCN VQIQVKLDNG QWVITKLHLE
301: HNHRLQCLDT LNWPSDEVEG ASGADKVCQN FQLKLPKYFS LGTFTSKLIF FVG

Best Arabidopsis Sequence Match ( AT3G59470.1 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.