Factsheet for VIT_05s0102g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00410.t01	Wine grape	cytosol	32.93	41.97
VIT_00s0174g00140.t01	Wine grape	cytosol	42.28	41.27
VIT_05s0102g00400.t01	Wine grape	nucleus	40.65	40.49
VIT_18s0001g06550.t01	Wine grape	cytosol	19.11	19.67
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	10.57	15.03
VIT_05s0102g00390.t01	Wine grape	nucleus	12.2	14.63
GSMUA_Achr5P14700_001	Banana	cytosol	26.42	14.38
VIT_00s0174g00090.t01	Wine grape	cytosol	10.57	14.13
VIT_18s0001g06680.t01	Wine grape	cytosol	18.7	13.03
VIT_00s0174g00120.t01	Wine grape	nucleus	12.6	12.45
VIT_05s0102g00470.t01	Wine grape	cytosol	9.76	12.18
VIT_05s0102g00690.t01	Wine grape	cytosol	13.01	11.98
VIT_00s0174g00130.t01	Wine grape	cytosol	9.35	11.22
HORVU4Hr1G062460.2	Barley	nucleus	25.2	9.24
Zm00001d028472_P001	Maize	nucleus	24.39	8.76
KXG39753	Sorghum	cytosol	24.8	8.71
TraesCS4B01G220300.2	Wheat	nucleus	23.98	8.65
Os03t0255400-01	Rice	nucleus	24.39	8.6
VIT_18s0117g00140.t01	Wine grape	nucleus	21.54	8.51
TraesCS4A01G083800.1	Wheat	nucleus	23.58	8.38
TraesCS4D01G220600.2	Wheat	cytosol, nucleus	23.17	8.11
VIT_18s0117g00390.t01	Wine grape	nucleus	20.73	7.46
VIT_00s0269g00010.t01	Wine grape	nucleus	4.07	6.29
GSMUA_Achr2P10090_001	Banana	nucleus	11.38	4.61

Protein Annotations

EntrezGene:100262716	wikigene:100262716	MapMan:15.5.46	ProteinID:CCB59839	ProteinID:CCB59839.1	ncoils:Coil
UniProt:F6HYS5	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN596500	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100262716	wikigene:LOC100262716
PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF83	UniParc:UPI00019834F5	ArrayExpress:VIT_05s0102g00440	EnsemblPlantsGene:VIT_05s0102g00440
EnsemblPlants:VIT_05s0102g00440.t01	unigene:Vvi.18036	RefSeq:XP_002265168	RefSeq:XP_002265168.2	RefSeq:XP_010650577.1	:

Description

No Description!

Coordinates

chr5:+:22394221..22398999

Molecular Weight (calculated)

28351.6 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.694

Length

246 amino acids

Sequence
(BLAST)

001: MEGTSGRPDF VESDGGSDDE TFENFGEHEG SEDGLLSCDS PVLNEELILR EPTMEGLSMQ NLEPFSGMTF PSLDDARNFY YEYAKRVGFT IRTNRIRHSL
101: KNMAVIGRDF VCSREGFRAA KHTSRKDRVL PPRPITREGC KAMIRLAARD GNKWVVTKFV REHNHKLMTH CKFSGELPII NILSEEEKDK KIQDLYNELQ
201: LERERSAGFQ QQLGMILKDL EEHADFMSVR VEDVVNKMRE IELDDQ

Best Arabidopsis Sequence Match ( AT3G59470.3 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.