Factsheet for VIT_18s0117g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g06550.t01	Wine grape	cytosol	11.24	29.29
VIT_05s0102g00410.t01	Wine grape	cytosol	7.87	25.39
VIT_18s0117g00390.t01	Wine grape	nucleus	27.77	25.29
VIT_05s0102g00440.t01	Wine grape	cytosol	8.51	21.54
VIT_18s0001g06680.t01	Wine grape	cytosol	11.88	20.96
VIT_00s0174g00140.t01	Wine grape	cytosol	8.03	19.84
VIT_05s0102g00400.t01	Wine grape	nucleus	7.87	19.84
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	4.49	16.18
VIT_00s0174g00090.t01	Wine grape	cytosol	4.65	15.76
VIT_05s0102g00470.t01	Wine grape	cytosol	4.01	12.69
VIT_05s0102g00390.t01	Wine grape	nucleus	4.01	12.2
VIT_00s0174g00130.t01	Wine grape	cytosol	3.85	11.71
VIT_00s0174g00120.t01	Wine grape	nucleus	4.49	11.24
VIT_05s0102g00690.t01	Wine grape	cytosol	3.37	7.87
VIT_00s0269g00010.t01	Wine grape	nucleus	1.93	7.55
PGSC0003DMT400028524	Potato	cytosol	0.64	3.23
Solyc06g073200.2.1	Tomato	cytosol	0.64	3.2

Protein Annotations

EntrezGene:100855073	wikigene:100855073	MapMan:15.5.46	EMBL:AM438914	ProteinID:CAN65000	ProteinID:CAN65000.1
ProteinID:CCB45123	ProteinID:CCB45123.1	ncoils:Coil	UniProt:F6GYT7	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EMBL:FN594973	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100855073
wikigene:LOC100855073	PFAM:PF03101	PFAM:PF05278	InterPro:PLipase-like	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71
UniParc:UPI000210A044	ArrayExpress:VIT_18s0117g00140	EnsemblPlantsGene:VIT_18s0117g00140	EnsemblPlants:VIT_18s0117g00140.t01	RefSeq:XP_003634560	RefSeq:XP_003634560.1
RefSeq:XP_010665261.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:23252047..23258808

Molecular Weight (calculated)

69501.1 Da

IEP (calculated)

5.975

GRAVY (calculated)

-0.722

Length

623 amino acids

Sequence
(BLAST)

001: MAGAPEHRSR FDQDITPRSA GRHGSTGFRP DVSGAQQFPF QEYGTSVNCE SDNTSIDWLY KCLFPQDNPE VDNFQEGYLA LSDFANDGPE MDQTCNEDGC
101: EIKTSVNVNE EKPEDNDQKP QSGMMFSSVI QAEEFYKDYA KKTGFTVRKG KIHKQPDGTL KWRRLLCSCE GFRAKKQSNQ GTKYQRLETR TGCEAQMQVT
201: LENEQWVITN LQLEHNHSLK NSNGSSDKSI QDALTRPSEK LEGALEADNV CPKHQLKQLK PQPVDSRRAK GETLLASAEA EDRDKTLRDG PRFIGNSSRL
301: LKENHNEQLF EEATKLQSIF HLHPKNQGYL PQQTQEDSVS RYSEQIISEV ETHCNYVQNA SDRLTMEERS LPVAKSADGE STIYSAQMPT TNDASHWSRG
401: SAVSIASSTV PTPTLPITTI TSAGTPAAGS SSPHLPCLQD KRSGASRDQG KQCASFGGVN TIVQVGSGVS HTSESIWQQI LTKYGDITAK STVTSPEFVA
501: FVKQSILKIV ELMHNNTARG LSDENISTIG RILGDLERVE VKVDWLRTRF VAVGHLIDYA KAKDNRDMIL RRFNEKRAQV AQLQLHLTQL QGKLDEAEAS
601: LQELQHQVPE WLTFEDTLGK GLL

Best Arabidopsis Sequence Match ( AT3G59470.2 )
(BLAST)

001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.