Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028524 | Potato | cytosol | 30.4 | 30.65 |
| Solyc06g073210.2.1 | Tomato | nucleus | 31.2 | 16.81 |
| Solyc09g057880.2.1 | Tomato | nucleus | 33.6 | 16.09 |
| Solyc09g057870.2.1 | Tomato | cytosol | 16.8 | 12.43 |
| VIT_18s0117g00390.t01 | Wine grape | nucleus | 5.6 | 1.02 |
| VIT_18s0117g00140.t01 | Wine grape | nucleus | 3.2 | 0.64 |
| VIT_18s0001g06550.t01 | Wine grape | cytosol | 0.8 | 0.42 |
| VIT_18s0001g06680.t01 | Wine grape | cytosol | 0.8 | 0.28 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010018 | GO:GO:0042753 | GO:GO:0045893 |
| UniProt:K4C939 | PFAM:PF03101 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF71 | EnsemblPlantsGene:Solyc06g073200.2 | EnsemblPlants:Solyc06g073200.2.1 |
| UniParc:UPI0002765DAF | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:45106853..45109457
Molecular Weight (calculated)
14982.0 Da
IEP (calculated)
10.300
GRAVY (calculated)
-1.082
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDKREKIVR QRAETRVGCR AMILVRKISS GKWVVTKFVK EHSHPLCPGK GRRDLIYDQY PNEHDKIREL SQQLAAEKKR SATYKRHLEM IFEHIEEHNQ
101: SLSKKIQDIV HNVRELESRD EHHHR
101: SLSKKIQDIV HNVRELESRD EHHHR
001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.