Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 48.66 | 61.95 |
| Bra037724.1-P | Field mustard | cytosol | 16.48 | 53.09 |
| CDY23353 | Canola | cytosol | 16.48 | 53.09 |
| CDY30396 | Canola | cytosol | 16.48 | 53.09 |
| KRH66221 | Soybean | nucleus | 38.7 | 48.79 |
| AT4G12850.1 | Thale cress | cytosol, extracellular, nucleus | 32.18 | 45.65 |
| AT2G43280.1 | Thale cress | cytosol | 35.63 | 45.15 |
| Bra037723.1-P | Field mustard | nucleus | 34.48 | 45.0 |
| CDY23354 | Canola | cytosol, mitochondrion, plastid | 34.87 | 37.92 |
| CDY30397 | Canola | cytosol, plastid | 36.02 | 37.01 |
| Solyc06g073200.2.1 | Tomato | cytosol | 16.09 | 33.6 |
| Solyc06g073210.2.1 | Tomato | nucleus | 27.97 | 31.47 |
| Solyc09g057870.2.1 | Tomato | cytosol | 20.31 | 31.36 |
Protein Annotations
| MapMan:15.5.46 | ncoils:Coil | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010018 | GO:GO:0042753 | GO:GO:0045893 |
| UniProt:K4CTH7 | PFAM:PF03101 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF80 | EnsemblPlantsGene:Solyc09g057880.2 | EnsemblPlants:Solyc09g057880.2.1 |
| UniParc:UPI000276B554 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:51693820..51705292
Molecular Weight (calculated)
29682.3 Da
IEP (calculated)
7.237
GRAVY (calculated)
-0.676
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MFEEEEPDLG EETSEIRIKA STALNPQNLV PSGTSKAASA VHTSDTHHFG VAVDLKAGVT TIDCSAESQS VVCQDNVVPE PFIGMEFESE YAAKEFYDYY
101: ARRVGFIMRI DQCRRSEVDK RSLSRRLSCN KQGHYVKMKN HHGPPRKART STREGCKAML LVKVNKSDKW VVTRFVKEHT HQLVPSGCSS GNAMDKKDRR
201: IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELMSKKI QVAVNNVKEV EAEVQKQPNS K
101: ARRVGFIMRI DQCRRSEVDK RSLSRRLSCN KQGHYVKMKN HHGPPRKART STREGCKAML LVKVNKSDKW VVTRFVKEHT HQLVPSGCSS GNAMDKKDRR
201: IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELMSKKI QVAVNNVKEV EAEVQKQPNS K
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.