CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30396	Canola	cytosol	28.75	85.19
Bra037723.1-P	Field mustard	nucleus	70.42	84.5
CDY23353	Canola	cytosol	28.33	83.95
CDY30397	Canola	cytosol, plastid	78.33	74.02
AT2G43280.1	Thale cress	cytosol	63.33	73.79
KRH62480	Soybean	nucleus	57.5	57.26
KRH56435	Soybean	nucleus	57.08	56.85
CDY28044	Canola	cytosol	37.92	45.5
VIT_00s0174g00130.t01	Wine grape	cytosol	38.33	44.88
CDY35937	Canola	nucleus	36.67	41.51
Solyc09g057880.2.1	Tomato	nucleus	37.92	34.87
CDX67797	Canola	nucleus	29.58	29.96
CDX98376	Canola	nucleus	29.58	29.96
CDY69788	Canola	nucleus	28.75	25.94
CDY06001	Canola	nucleus	29.17	25.0

Protein Annotations

EnsemblPlants:CDY23354	EnsemblPlantsGene:GSBRNA2T00021953001	GO:A0A078GDA5	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	ncoils:Coil
PANTHER:PTHR31669	PANTHER:PTHR31669:SF46	PFAM:PF03101	ProteinID:CDY23354	ProteinID:CDY23354.1	SEG:seg
UniParc:UPI0004EF12B9	UniProt:A0A078GDA5	MapMan:15.5.46	:	:	:

Description

BnaC04g48820DBnaC04g48820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDA5]

Coordinates

chrLK032143:+:89945..94435

Molecular Weight (calculated)

28243.1 Da

IEP (calculated)

10.299

GRAVY (calculated)

-0.698

Length

240 amino acids

Sequence
(BLAST)

001: MYLKNTTTFF MNTMSGLPQL IYFLLFKTSP SQFLKYQFRS PLSLSLSRRR SFQIVKSMED DSTIVPREGT EFESEEAAKM FYDDYSRSLG FVMRVMSCRR
101: SERDGRVLAR RFGCNKEGRC VSVRGKSGSV RKPRQSTREG CKAMVHVKYD RSGKWVVTKF VKEHNHPLVV EPRQARQTLD EKDKRIQELT IELRNKKRLC
201: AAYKEQLDAF AKIVEEYSNR MSKRVESVVE NLKEFEHIEQ

Best Arabidopsis Sequence Match ( AT2G43280.1 )
(BLAST)

001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.