CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06001	Canola	nucleus	98.5	93.57
CDX67797	Canola	nucleus	80.83	90.72
CDX98376	Canola	nucleus	80.08	89.87
AT3G59470.2	Thale cress	cytosol	80.45	81.37
PGSC0003DMT400069495	Potato	nucleus	52.63	55.78
VIT_05s0102g00690.t01	Wine grape	cytosol	54.89	54.68
KRH24623	Soybean	nucleus	51.13	51.71
KRH10126	Soybean	nucleus	52.63	47.62
KRH29624	Soybean	nucleus	50.0	45.08
CDY23353	Canola	cytosol	12.41	40.74
CDY30396	Canola	cytosol	12.41	40.74
CDY28044	Canola	cytosol	29.32	39.0
CDY35937	Canola	nucleus	30.08	37.74
CDY30397	Canola	cytosol, plastid	27.82	29.13
CDY23354	Canola	cytosol, mitochondrion, plastid	25.94	28.75

Protein Annotations

EnsemblPlants:CDY69788	EnsemblPlantsGene:GSBRNA2T00092475001	GO:A0A078JQE8	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	ncoils:Coil
PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	PFAM:PF03101	ProteinID:CDY69788	ProteinID:CDY69788.1	UniParc:UPI0004EE80B9
UniProt:A0A078JQE8	MapMan:15.5.46	:	:	:	:

Description

BnaC08g48980DBnaC08g48980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQE8]

Coordinates

chrLK040328:-:508..2086

Molecular Weight (calculated)

30670.0 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.962

Length

266 amino acids

Sequence
(BLAST)

001: MNVDFRIDNG DADGMMMTIS VENHNEMGES SGQAMIEQDD DENRNEIGEN SNQEMPLEQD EKVDPDSIPL TVSDMAEEEV QGGDEPYVGQ EFESEAAAHG
101: FYNAYATKVG FVIRVSKLSR SRHDGSPIGR QLVCNKEGYR LPSKRDKVIR QRAETRVGCR AMILIRKENS GKWVITKFAK EHNHPLMPGR VRRGCIYDQY
201: PNEHDKIQEL MQQLAAEKKR AATYKRHLEM LFEQIEQHNE SLTKRIQHIV DNVRDLDQRD HQQNQV

Best Arabidopsis Sequence Match ( AT3G59470.2 )
(BLAST)

001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.