Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003377.1-P | Field mustard | nucleus | 77.57 | 86.08 |
| CDX67797 | Canola | nucleus | 77.57 | 86.08 |
| CDX98376 | Canola | nucleus | 76.81 | 85.23 |
| CDY69788 | Canola | nucleus | 81.37 | 80.45 |
| CDY06001 | Canola | nucleus | 82.51 | 77.5 |
| PGSC0003DMT400069495 | Potato | nucleus | 54.37 | 56.97 |
| VIT_05s0102g00690.t01 | Wine grape | cytosol | 54.75 | 53.93 |
| KRH24623 | Soybean | nucleus | 50.57 | 50.57 |
| KRH10126 | Soybean | nucleus | 52.47 | 46.94 |
| KRH29624 | Soybean | nucleus | 49.05 | 43.73 |
| AT4G12850.1 | Thale cress | cytosol, extracellular, nucleus | 26.24 | 37.5 |
| AT3G07500.1 | Thale cress | nucleus | 29.66 | 35.94 |
| AT2G43280.1 | Thale cress | cytosol | 26.62 | 33.98 |
Protein Annotations
| MapMan:15.5.46 | EntrezGene:825116 | ProteinID:AEE79929.2 | ArrayExpress:AT3G59470 | EnsemblPlantsGene:AT3G59470 | RefSeq:AT3G59470 |
| TAIR:AT3G59470 | RefSeq:AT3G59470-TAIR-G | EnsemblPlants:AT3G59470.2 | TAIR:AT3G59470.2 | ncoils:Coil | UniProt:F4J8B6 |
| InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_001319800.1 | PFAM:PF03101 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR31669 | PANTHER:PTHR31669:SF71 | UniParc:UPI000848E390 | : | : | : |
Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
Coordinates
chr3:-:21978810..21980839
Molecular Weight (calculated)
30113.6 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.824
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.