CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24623	Soybean	nucleus	60.2	67.3
VIT_05s0102g00690.t01	Wine grape	cytosol	59.52	65.54
PGSC0003DMT400069495	Potato	nucleus	53.06	62.15
KRH29624	Soybean	nucleus	60.2	60.0
Bra003377.1-P	Field mustard	nucleus	46.6	57.81
CDX67797	Canola	nucleus	46.6	57.81
CDX98376	Canola	nucleus	46.26	57.38
CDY69788	Canola	nucleus	47.62	52.63
AT3G59470.2	Thale cress	cytosol	46.94	52.47
CDY06001	Canola	nucleus	47.96	50.36
KRH56435	Soybean	nucleus	27.89	34.02
KRH62480	Soybean	nucleus	27.89	34.02
KRG99562	Soybean	cytosol	23.47	31.51
KRH66221	Soybean	nucleus	21.43	30.43
KRH46568	Soybean	cytosol	14.63	30.28
KRH23208	Soybean	nucleus	9.86	11.33
KRH10133	Soybean	nucleus	9.18	9.89

Protein Annotations

EntrezGene:100806900	MapMan:15.5.46	EMBL:ACUP02009118	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EnsemblPlantsGene:GLYMA_15G029900
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010018
GO:GO:0042753	GO:GO:0045893	UniProt:I1MD62	EnsemblPlants:KRH10126	ProteinID:KRH10126	ProteinID:KRH10126.1
PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI000295F04B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:2398316..2401541

Molecular Weight (calculated)

33134.4 Da

IEP (calculated)

9.570

GRAVY (calculated)

-0.536

Length

294 amino acids

Sequence
(BLAST)

001: MNLLLLSLHG TQKHKKFIFT ITVASYDYRI RVSLNSQSFV AAVEFGIDAS INGETVGNAT IVQINSSTAD GNKVGCSSFN PAYKQGHDDN ITQDSSGGDT
101: IPSGIPAVSV ASVDEPYVGQ EFESEAAAHA FYNAYAKRVG FIIRVSKLSR SRRDGTAIGR ALVCNREGYR MPDKREKIVR QRAETRVGCR AMILVRKVSS
201: GKWVITKFIM EHTHPLTPGK GRRDCIYEQY PNEHDKIREL SQQLAIERKR SATYKRHLEL IFEQIEEHND SLSKKIQHIV DSVKEMETKE QNQR

Best Arabidopsis Sequence Match ( AT3G59470.2 )
(BLAST)

001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.