CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0174g00130.t01	Wine grape	cytosol	52.66	53.17
KRG99562	Soybean	cytosol	42.51	40.18
Solyc09g057880.2.1	Tomato	nucleus	48.79	38.7
KRH56435	Soybean	nucleus	43.0	36.93
KRH62480	Soybean	nucleus	42.51	36.51
KRH46568	Soybean	cytosol	23.67	34.51
KRH24623	Soybean	nucleus	31.4	24.71
KRH29624	Soybean	nucleus	31.88	22.37
KRH10126	Soybean	nucleus	30.43	21.43
KRH23208	Soybean	nucleus	12.56	10.16
KRH10133	Soybean	nucleus	13.04	9.89

Protein Annotations

EntrezGene:100802375	MapMan:15.5.46	EMBL:ACUP02001924	ncoils:Coil	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EnsemblPlantsGene:GLYMA_03G091500	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010018	GO:GO:0042753	GO:GO:0045893	UniProt:K7KDZ0	EnsemblPlants:KRH66221	ProteinID:KRH66221
ProteinID:KRH66221.1	PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF80	UniParc:UPI0002336D78	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:27102811..27105432

Molecular Weight (calculated)

23882.6 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.530

Length

207 amino acids

Sequence
(BLAST)

001: MDLEAVAEAV ENSAEIISAA CEGSSIEEPN VGMEFQSEEA AKNFYEEYAR REGFVVRLDR CHRSEVDKQI ISRRFSCNKQ GFHVRVRNKT KPVHKPRASI
101: REGCEAMMYV KVNTCGKWVV TKFVKEHSHL LNASALPYNS LIESKDRIIQ QLAKELEHQD RLCQHYRRQL FSLLETVDEQ TKCLSTKVEL VVNTVKKLEN
201: EVQKPLI

Best Arabidopsis Sequence Match ( AT2G43280.1 )
(BLAST)

001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.