CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46568	Soybean	cytosol	39.73	61.27
AT4G12850.1	Thale cress	cytosol, extracellular, nucleus	49.32	58.7
KRH66221	Soybean	nucleus	40.18	42.51
KRH56435	Soybean	nucleus	45.66	41.49
KRH62480	Soybean	nucleus	45.66	41.49
KRH24623	Soybean	nucleus	34.7	28.9
KRH29624	Soybean	nucleus	34.25	25.42
KRH10126	Soybean	nucleus	31.51	23.47
KRH23208	Soybean	nucleus	13.24	11.33
KRH10133	Soybean	nucleus	11.87	9.52

Protein Annotations

MapMan:15.5.46	EMBL:ACUP02011128	ncoils:Coil	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EnsemblPlantsGene:GLYMA_18G154100
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010018
GO:GO:0042753	GO:GO:0045893	UniProt:K7MSA6	EnsemblPlants:KRG99562	ProteinID:KRG99562	ProteinID:KRG99562.1
PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF80	UniParc:UPI000233EB2A	:	:

Description

hypothetical protein

Coordinates

chr18:+:30667231..30677879

Molecular Weight (calculated)

24851.7 Da

IEP (calculated)

8.364

GRAVY (calculated)

-0.608

Length

219 amino acids

Sequence
(BLAST)

001: MDSVVVDSDK GNEAEHSCLE ESISIFGGVE VQEPYVGMEF GSEEDARKFY VDYARRVGFV VRIMQRRRSG IDGRTLARRL GCNKQGFSPN NKGILGPEKK
101: PRPSAREGCK ATILVKFEKS GKWIVTRFVK DHNHPLIATA NGFSTAGDKD KKIVELTMEL ERQDQLCAAY REKLLSFISN VEEETEELST KIQLIIENVR
201: RAESDMKKCS QNRKPWCLT

Best Arabidopsis Sequence Match ( AT4G12850.1 )
(BLAST)

001: MMTGDLKLDE PYVGLKFESE EEAKDFYVEY SKRLGFVVRM MQRRRSGIDG RTLARRLGCN KQGFGPNNQR SSSSSSSSRE GCKATILVKM EKSGKWVVTR
101: FIKEHNHSLQ FIGSSSYDSF ADKERKIKEL TEEIECQDRL CDVYRDRLVS FIDNVEHYTE ELSLKVRDIV ENVKKLECQI QTRA

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:TAIR;Acc:AT4G12850]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.