CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24623	Soybean	nucleus	85.08	95.44
VIT_05s0102g00690.t01	Wine grape	cytosol	56.27	62.17
KRH10126	Soybean	nucleus	60.0	60.2
PGSC0003DMT400069495	Potato	nucleus	50.85	59.76
Bra003377.1-P	Field mustard	nucleus	45.42	56.54
CDX67797	Canola	nucleus	45.42	56.54
CDX98376	Canola	nucleus	45.08	56.12
CDY69788	Canola	nucleus	45.08	50.0
AT3G59470.2	Thale cress	cytosol	43.73	49.05
CDY06001	Canola	nucleus	46.44	48.93
KRG99562	Soybean	cytosol	25.42	34.25
KRH66221	Soybean	nucleus	22.37	31.88
KRH46568	Soybean	cytosol	15.25	31.69
KRH56435	Soybean	nucleus	25.76	31.54
KRH62480	Soybean	nucleus	25.76	31.54
KRH23208	Soybean	nucleus	9.15	10.55
KRH10133	Soybean	nucleus	8.81	9.52

Protein Annotations

EntrezGene:100780613	MapMan:15.5.46	EMBL:ACUP02006806	ncoils:Coil	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EnsemblPlantsGene:GLYMA_11G127400	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010018	GO:GO:0042753	GO:GO:0045893	UniProt:I1LJP5	EnsemblPlants:KRH29624	ProteinID:KRH29624
ProteinID:KRH29624.1	PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI000233D128	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:9672060..9675203

Molecular Weight (calculated)

33114.8 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.603

Length

295 amino acids

Sequence
(BLAST)

001: MNQLFINFID CCVELEYHLC TENLIPDSFV TAVEVEIDGS VTVETVGNTA IGEVSSIADD NREGGSSVEP NDNQDQHDNG TQDSSGGITI PSAIPTVSVV
101: SVEEPYVGQE FGSEAAAHAF YNAYATEVGF IVRVSKLSRS RRDGTAIGRT LVCNKEGFRM ADKREKIVRQ RAETRVGCRA MIMVRKLSSG KWVVAKFVKE
201: HTHPLTPGKG RRDFYYEQYP TEQDKIRELS QQLATEKKRS AAYKRHLELI FEQIEEQNDN LSKKIQHIVD CVKEMEAKEE HSRQCEGDGS QRTTE

Best Arabidopsis Sequence Match ( AT3G07500.1 )
(BLAST)

001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.