Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67797 | Canola | nucleus | 99.16 | 99.16 |
| CDX98376 | Canola | nucleus | 98.73 | 98.73 |
| AT3G59470.2 | Thale cress | cytosol | 86.08 | 77.57 |
| PGSC0003DMT400069495 | Potato | nucleus | 61.18 | 57.77 |
| VIT_05s0102g00690.t01 | Wine grape | cytosol | 62.03 | 55.06 |
| KRH24623 | Soybean | nucleus | 57.81 | 52.09 |
| KRH10126 | Soybean | nucleus | 57.81 | 46.6 |
| KRH29624 | Soybean | nucleus | 56.54 | 45.42 |
| Bra037724.1-P | Field mustard | cytosol | 13.92 | 40.74 |
| Bra037723.1-P | Field mustard | nucleus | 28.27 | 33.5 |
Protein Annotations
| EnsemblPlants:Bra003377.1 | EnsemblPlants:Bra003377.1-P | EnsemblPlantsGene:Bra003377 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | ncoils:Coil |
| PANTHER:PTHR31669 | PANTHER:PTHR31669:SF71 | PFAM:PF03101 | UniParc:UPI000254170F | UniProt:M4CGP4 | MapMan:15.5.46 |
Description
AT3G59470 (E=1e-120) | far-red impaired responsive family protein / FAR1 family protein
Coordinates
chrA07:-:12912000..12912933
Molecular Weight (calculated)
27370.3 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.938
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHNEMGESS GQAMIEQDDE NHNEIGEHSG EEMTLEQDEK VDPDSIPLEV ADMADEPFVG QEFESEAAAH GFYNAYATKV GFVIRVSKLS RSRHDGSPIG
101: RQLVCNKEGY RLPSKRDKVI RQRAETRVGC RAMILIRKES SGKWVITKFV KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE LMQQLAAEKK RAATYKRHLE
201: MLFEHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQA
101: RQLVCNKEGY RLPSKRDKVI RQRAETRVGC RAMILIRKES SGKWVITKFV KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE LMQQLAAEKK RAATYKRHLE
201: MLFEHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQA
001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.