CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29624	Soybean	nucleus	95.44	85.08
VIT_05s0102g00690.t01	Wine grape	cytosol	62.74	61.8
KRH10126	Soybean	nucleus	67.3	60.2
PGSC0003DMT400069495	Potato	nucleus	56.65	59.36
Bra003377.1-P	Field mustard	nucleus	52.09	57.81
CDX67797	Canola	nucleus	52.09	57.81
CDX98376	Canola	nucleus	51.71	57.38
CDY69788	Canola	nucleus	51.71	51.13
AT3G59470.2	Thale cress	cytosol	50.57	50.57
CDY06001	Canola	nucleus	52.47	49.29
KRG99562	Soybean	cytosol	28.9	34.7
KRH56435	Soybean	nucleus	30.04	32.78
KRH62480	Soybean	nucleus	30.04	32.78
KRH66221	Soybean	nucleus	24.71	31.4
KRH46568	Soybean	cytosol	16.73	30.99
KRH23208	Soybean	nucleus	10.27	10.55
KRH10133	Soybean	nucleus	9.51	9.16

Protein Annotations

EntrezGene:100777092	MapMan:15.5.46	UniProt:A0A0R0HE97	EMBL:ACUP02007179	ncoils:Coil	InterPro:FAR1_DNA_bnd_dom
InterPro:FHY3/FAR1	EnsemblPlantsGene:GLYMA_12G052000	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0010018	GO:GO:0042753	GO:GO:0045893	EnsemblPlants:KRH24623	ProteinID:KRH24623
ProteinID:KRH24623.1	PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	UniParc:UPI0001BA5C18	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:3722076..3725145

Molecular Weight (calculated)

29718.9 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.782

Length

263 amino acids

Sequence
(BLAST)

001: MEVEIDGSVT VETVGNTAMG EVSSIADDNR EGGSSVEPND KQDQHDNMTQ DSSGGITIPT AIPTVSVVSV EEPYVGQEFG SEAAAHAFYN AYATDVGFIV
101: RVSKLSRSRR DGTAIGRTLV CNKEGFRMAD KREKIVRQRA ETRVGCRAMI MVRKLSSGKW VIAKFVKEHT HPLTPGKGRR DFYYEQYPTE QDKIRELSQQ
201: LATEKKRSAA YKRHLELIFE QIEEQNENLS KKIQHIVDSV KEMEAKEEHS RQWEGDGSQR RTY

Best Arabidopsis Sequence Match ( AT3G59470.2 )
(BLAST)

001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.