Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003377.1-P | Field mustard | nucleus | 57.77 | 61.18 |
| CDX67797 | Canola | nucleus | 57.77 | 61.18 |
| CDX98376 | Canola | nucleus | 56.97 | 60.34 |
| VIT_05s0102g00690.t01 | Wine grape | cytosol | 64.14 | 60.3 |
| KRH24623 | Soybean | nucleus | 59.36 | 56.65 |
| AT3G59470.2 | Thale cress | cytosol | 56.97 | 54.37 |
| KRH10126 | Soybean | nucleus | 62.15 | 53.06 |
| CDY69788 | Canola | nucleus | 55.78 | 52.63 |
| KRH29624 | Soybean | nucleus | 59.76 | 50.85 |
| CDY06001 | Canola | nucleus | 56.18 | 50.36 |
| PGSC0003DMT400069493 | Potato | nucleus | 29.08 | 33.64 |
| PGSC0003DMT400028524 | Potato | cytosol | 15.94 | 32.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069495 | EnsemblPlantsGene:PGSC0003DMG402027016 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | ncoils:Coil | PANTHER:PTHR31669 |
| PANTHER:PTHR31669:SF71 | PFAM:PF03101 | PGSC:PGSC0003DMG402027016 | SEG:seg | UniParc:UPI000296DB6B | UniProt:M1CKJ5 |
| MapMan:15.5.46 | : | : | : | : | : |
Description
Far-red impaired responsive family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402027016]
Coordinates
chr6:+:53767024..53772409
Molecular Weight (calculated)
28907.0 Da
IEP (calculated)
6.397
GRAVY (calculated)
-0.761
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFVVDDHVS GDEEEGTVVE LRTVDENLIG GSSSEEALHQ VHDVKVDEDL PEREDLLLEE AQSLDNSTSD EPFVGLEFES EAAAHAFYNA YATRVGFIIR
101: VSKLSRSRRD GSAIGRALVC NKEGFRMPDK REKIVRQRAE TRVGCRAMIL VRKISSGKWV VTKFVKEHSH PLCPGKGRRD LIYDQYPNEH DKIRELSQQL
201: AAEKKRSATY KRHLEMIFEH IEEHNQSLSK KIQDIVHNVR ELESRDQHHH R
101: VSKLSRSRRD GSAIGRALVC NKEGFRMPDK REKIVRQRAE TRVGCRAMIL VRKISSGKWV VTKFVKEHSH PLCPGKGRRD LIYDQYPNEH DKIRELSQQL
201: AAEKKRSATY KRHLEMIFEH IEEHNQSLSK KIQDIVHNVR ELESRDQHHH R
001: MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE KVDLDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV
101: YATKVGFVIR VSKLSRSRHD GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH SLMPGRVRRG CIYDQYPNEH
201: DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK RIQHIVDNVR NLEQRDHQQN HQV
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.