Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073210.2.1 | Tomato | nucleus | 77.42 | 72.41 |
| VIT_05s0102g00470.t01 | Wine grape | cytosol | 57.14 | 62.94 |
| PGSC0003DMT400028524 | Potato | cytosol | 18.89 | 33.06 |
| PGSC0003DMT400069495 | Potato | nucleus | 33.64 | 29.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069493 | EnsemblPlantsGene:PGSC0003DMG401027016 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | ncoils:Coil | PANTHER:PTHR31669 |
| PANTHER:PTHR31669:SF46 | PFAM:PF03101 | PGSC:PGSC0003DMG401027016 | SEG:seg | UniParc:UPI000295D0B7 | UniProt:M1CKJ4 |
| MapMan:15.5.46 | : | : | : | : | : |
Description
Far-red impaired responsive family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401027016]
Coordinates
chr6:+:53773371..53777515
Molecular Weight (calculated)
24864.4 Da
IEP (calculated)
9.892
GRAVY (calculated)
-0.936
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVQVLEDNG ARRVESSAEG QVSTSEADRS HRTQEPNEGM TFESEEAARA YYDEYAGMTG FITRVLSSRK SERDGSIISR GLGCRGIPDN QRPASLANQK
101: RDRQRDGCTA MILVKREKPG TWVVRKFVRD HNHPLVMSPS KRRPTFDEKD KRIQELTAEL RIKKRLTAAY REHLLSLMKD VESHSEHLST KVQAVQSILI
201: ELEAKRQELS NHSRHHK
101: RDRQRDGCTA MILVKREKPG TWVVRKFVRD HNHPLVMSPS KRRPTFDEKD KRIQELTAEL RIKKRLTAAY REHLLSLMKD VESHSEHLST KVQAVQSILI
201: ELEAKRQELS NHSRHHK
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.