Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069493 | Potato | nucleus | 72.41 | 77.42 |
| VIT_05s0102g00470.t01 | Wine grape | cytosol | 59.48 | 70.05 |
| Solyc09g057870.2.1 | Tomato | cytosol | 23.28 | 31.95 |
| Solyc06g073200.2.1 | Tomato | cytosol | 16.81 | 31.2 |
| Solyc09g057880.2.1 | Tomato | nucleus | 31.47 | 27.97 |
Protein Annotations
| MapMan:15.5.46 | ncoils:Coil | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010018 | GO:GO:0042753 | GO:GO:0045893 |
| UniProt:K4C940 | PFAM:PF03101 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF46 | EnsemblPlantsGene:Solyc06g073210.2 | EnsemblPlants:Solyc06g073210.2.1 |
| UniParc:UPI0002765DB0 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:45110532..45114170
Molecular Weight (calculated)
26321.9 Da
IEP (calculated)
8.667
GRAVY (calculated)
-0.962
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMDVHNLED NGAGRVESSA EGQVSTSEAD RTQEPNEGMT FESEEAARAY YDEYAGMTGF ITRVLSSRKS ERDGSIISRG LGCRGIPDNQ RPVSLVNQKR
101: DRRRDGCTAM ILVKREKPGT WVVRKFVRDH NHPLVIPPSK RRPTSDEKDK RIQELTAELR TKKRLTAAYR EQLLSLMKDV ESHSEHLSAK VQAVQSILKE
201: LEAKRQELSN HSGHHKNSRV YTPVESDYDG TD
101: DRRRDGCTAM ILVKREKPGT WVVRKFVRDH NHPLVIPPSK RRPTSDEKDK RIQELTAELR TKKRLTAAYR EQLLSLMKDV ESHSEHLSAK VQAVQSILKE
201: LEAKRQELSN HSGHHKNSRV YTPVESDYDG TD
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.