Factsheet for VIT_05s0102g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073210.2.1	Tomato	nucleus	70.05	59.48
PGSC0003DMT400069493	Potato	nucleus	62.94	57.14
VIT_05s0102g00390.t01	Wine grape	nucleus	51.78	49.76
VIT_00s0174g00130.t01	Wine grape	cytosol	47.21	45.37
VIT_00s0269g00010.t01	Wine grape	nucleus	31.98	39.62
VIT_00s0174g00120.t01	Wine grape	nucleus	40.61	32.13
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	27.92	31.79
VIT_00s0174g00090.t01	Wine grape	cytosol	28.43	30.43
VIT_05s0102g00690.t01	Wine grape	cytosol	38.58	28.46
VIT_05s0102g00400.t01	Wine grape	nucleus	14.72	11.74
VIT_05s0102g00410.t01	Wine grape	cytosol	10.66	10.88
VIT_05s0102g00440.t01	Wine grape	cytosol	12.18	9.76
VIT_00s0174g00140.t01	Wine grape	cytosol	11.17	8.73
VIT_18s0001g06550.t01	Wine grape	cytosol	9.64	7.95
VIT_18s0001g06680.t01	Wine grape	cytosol	9.64	5.38
VIT_18s0117g00140.t01	Wine grape	nucleus	12.69	4.01
VIT_18s0117g00390.t01	Wine grape	nucleus	13.71	3.95

Protein Annotations

EntrezGene:100249265	wikigene:100249265	MapMan:15.5.46	EMBL:AM461853	ProteinID:CAN76966	ProteinID:CAN76966.1
ProteinID:CBI36670	ProteinID:CBI36670.3	ncoils:Coil	UniProt:D7U1Q4	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1
EMBL:FN596500	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010018	GO:GO:0042753	GO:GO:0045893	EntrezGene:LOC100249265	wikigene:LOC100249265	PFAM:PF03101
PANTHER:PTHR31669	PANTHER:PTHR31669:SF46	UniParc:UPI0001BE48D1	ArrayExpress:VIT_05s0102g00470	EnsemblPlantsGene:VIT_05s0102g00470	EnsemblPlants:VIT_05s0102g00470.t01
RefSeq:XP_002266504	RefSeq:XP_002266504.1	:	:	:	:

Description

No Description!

Coordinates

chr5:-:22417000..22424479

Molecular Weight (calculated)

22820.4 Da

IEP (calculated)

10.191

GRAVY (calculated)

-0.852

Length

197 amino acids

Sequence
(BLAST)

001: METSAGGELI SFEGDTVQEP YEGMLFESEG AAKAFYDEYA RRVGFVTRVL SSRKSERDGS IISRGLGCRG GSDNKKARHL QTQKRDRRRE GCTAMILVKR
101: EKPGQWIVRK FVRDHNHPLV VQLQKSRPTL DEKDKKIQEL TAELRVKKRL TSAYREQLLM FVKDVENHNE HLSKKVEVVV DNLKDLEAKR QELLQHR

Best Arabidopsis Sequence Match ( AT2G43280.1 )
(BLAST)

001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.