Factsheet for VIT_00s0174g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037724.1-P	Field mustard	cytosol	23.41	59.26
CDY23353	Canola	cytosol	23.41	59.26
CDY30396	Canola	cytosol	23.41	59.26
KRH66221	Soybean	nucleus	53.17	52.66
Bra037723.1-P	Field mustard	nucleus	48.29	49.5
AT2G43280.1	Thale cress	cytosol	49.27	49.03
Solyc09g057880.2.1	Tomato	nucleus	61.95	48.66
VIT_05s0102g00470.t01	Wine grape	cytosol	45.37	47.21
AT4G12850.1	Thale cress	cytosol, extracellular, nucleus	41.95	46.74
VIT_05s0102g00390.t01	Wine grape	nucleus	44.39	44.39
VIT_00s0269g00010.t01	Wine grape	nucleus	33.66	43.4
CDY23354	Canola	cytosol, mitochondrion, plastid	44.88	38.33
CDY30397	Canola	cytosol, plastid	46.83	37.8
VIT_00s0174g00120.t01	Wine grape	nucleus	42.44	34.94
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	29.27	34.68
VIT_00s0174g00090.t01	Wine grape	cytosol	30.24	33.7
VIT_05s0102g00690.t01	Wine grape	cytosol	36.59	28.09
VIT_05s0102g00410.t01	Wine grape	cytosol	13.17	13.99
VIT_05s0102g00400.t01	Wine grape	nucleus	16.1	13.36
VIT_00s0174g00140.t01	Wine grape	cytosol	13.17	10.71
VIT_05s0102g00440.t01	Wine grape	cytosol	11.22	9.35
VIT_18s0001g06550.t01	Wine grape	cytosol	9.76	8.37
VIT_18s0001g06680.t01	Wine grape	cytosol	11.22	6.52
VIT_18s0117g00140.t01	Wine grape	nucleus	11.71	3.85
VIT_18s0117g00390.t01	Wine grape	nucleus	11.22	3.36

Protein Annotations

MapMan:15.5.46	EMBL:AM458786	ProteinID:CAN81119	ProteinID:CAN81119.1	ProteinID:CCB60937	ProteinID:CCB60937.1
UniProt:F6I1X0	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN596519	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010018	GO:GO:0042753	GO:GO:0045893
PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF80	UniParc:UPI0001986381	ArrayExpress:VIT_00s0174g00130	EnsemblPlantsGene:VIT_00s0174g00130
EnsemblPlants:VIT_00s0174g00130.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:6914651..6918647

Molecular Weight (calculated)

23605.2 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.707

Length

205 amino acids

Sequence
(BLAST)

001: MGAGNVEASA ETGSVAFEED SVVEPCVGME FDSEDAAKEF YDEYARRVGF IMRIDQCRRS EVDKRILSRR LSCNKQGFYV KIRDQYGPVR KPRPSTRQGC
101: KAMMLVKLNK SGKWVVTRFV KDHTHPLVVS SRPSRSSMDS KDRRIQELTM EVEHQDQLCE LYRGQLITFL KNVEEQTEVL STKIEVAVNS VRKVESEGQK
201: HSRHR

Best Arabidopsis Sequence Match ( AT2G43280.1 )
(BLAST)

001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.