Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037724.1-P | Field mustard | cytosol | 31.07 | 79.01 |
| CDY23353 | Canola | cytosol | 31.07 | 79.01 |
| CDY30396 | Canola | cytosol | 31.07 | 79.01 |
| Bra037723.1-P | Field mustard | nucleus | 76.21 | 78.5 |
| CDY23354 | Canola | cytosol, mitochondrion, plastid | 73.79 | 63.33 |
| CDY30397 | Canola | cytosol, plastid | 77.67 | 62.99 |
| KRH62480 | Soybean | nucleus | 68.45 | 58.51 |
| KRH56435 | Soybean | nucleus | 67.96 | 58.09 |
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 49.03 | 49.27 |
| AT4G12850.1 | Thale cress | cytosol, extracellular, nucleus | 38.35 | 42.93 |
| AT3G07500.1 | Thale cress | nucleus | 41.26 | 39.17 |
| Solyc09g057880.2.1 | Tomato | nucleus | 45.15 | 35.63 |
| AT3G59470.2 | Thale cress | cytosol | 33.98 | 26.62 |
Protein Annotations
| MapMan:15.5.46 | EntrezGene:818930 | ProteinID:AAB64334.1 | ProteinID:AAM14941.1 | ProteinID:AEC10247.1 | ProteinID:ANM61585.1 |
| ArrayExpress:AT2G43280 | EnsemblPlantsGene:AT2G43280 | RefSeq:AT2G43280 | TAIR:AT2G43280 | RefSeq:AT2G43280-TAIR-G | EnsemblPlants:AT2G43280.1 |
| TAIR:AT2G43280.1 | EMBL:BT002891 | EMBL:BT004409 | ncoils:Coil | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010018 |
| GO:GO:0042753 | GO:GO:0045893 | RefSeq:NP_001323793.1 | RefSeq:NP_181857.2 | PFAM:PF03101 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31669 |
| PANTHER:PTHR31669:SF46 | UniProt:Q84J94 | UniParc:UPI000000BE1F | : | : | : |
Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
Coordinates
chr2:+:17989602..17991022
Molecular Weight (calculated)
24020.7 Da
IEP (calculated)
9.219
GRAVY (calculated)
-0.864
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.