Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037724.1-P | Field mustard | cytosol | 98.77 | 98.77 |
| CDY30396 | Canola | cytosol | 98.77 | 98.77 |
| AT2G43280.1 | Thale cress | cytosol | 79.01 | 31.07 |
| CDY23354 | Canola | cytosol, mitochondrion, plastid | 83.95 | 28.33 |
| CDY30397 | Canola | cytosol, plastid | 85.19 | 27.17 |
| KRH56435 | Soybean | nucleus | 74.07 | 24.9 |
| KRH62480 | Soybean | nucleus | 74.07 | 24.9 |
| VIT_00s0174g00130.t01 | Wine grape | cytosol | 59.26 | 23.41 |
| CDY28044 | Canola | cytosol | 50.62 | 20.5 |
| CDY35937 | Canola | nucleus | 49.38 | 18.87 |
| Solyc09g057880.2.1 | Tomato | nucleus | 53.09 | 16.48 |
| CDX67797 | Canola | nucleus | 40.74 | 13.92 |
| CDX98376 | Canola | nucleus | 40.74 | 13.92 |
| CDY69788 | Canola | nucleus | 40.74 | 12.41 |
| CDY06001 | Canola | nucleus | 40.74 | 11.79 |
Protein Annotations
| EnsemblPlants:CDY23353 | EnsemblPlantsGene:GSBRNA2T00021952001 | GO:A0A078GFF5 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | PANTHER:PTHR31669 |
| PANTHER:PTHR31669:SF46 | PFAM:PF03101 | ProteinID:CDY23353 | ProteinID:CDY23353.1 | UniParc:UPI0004EE7895 | UniProt:A0A078GFF5 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC04g48810DBnaC04g48810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFF5]
Coordinates
chrLK032143:+:89503..89748
Molecular Weight (calculated)
9137.0 Da
IEP (calculated)
9.894
GRAVY (calculated)
-0.560
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MAVEFESEDA AKMFYDDYSR SLGFVMRVMS CRRSERDGRI LARRFGCNKE GSCVSVRGKS GSVRKPRQST RGGLVRLCDS C
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.