CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003377.1-P	Field mustard	nucleus	98.73	98.73
CDX67797	Canola	nucleus	98.73	98.73
CDY69788	Canola	nucleus	89.87	80.08
AT3G59470.2	Thale cress	cytosol	85.23	76.81
CDY06001	Canola	nucleus	90.72	76.79
PGSC0003DMT400069495	Potato	nucleus	60.34	56.97
VIT_05s0102g00690.t01	Wine grape	cytosol	61.6	54.68
KRH24623	Soybean	nucleus	57.38	51.71
KRH10126	Soybean	nucleus	57.38	46.26
KRH29624	Soybean	nucleus	56.12	45.08
CDY23353	Canola	cytosol	13.92	40.74
CDY30396	Canola	cytosol	13.92	40.74
CDY28044	Canola	cytosol	33.76	40.0
CDY35937	Canola	nucleus	33.76	37.74
CDY23354	Canola	cytosol, mitochondrion, plastid	29.96	29.58
CDY30397	Canola	cytosol, plastid	31.65	29.53

Protein Annotations

EnsemblPlants:CDX98376	EnsemblPlantsGene:GSBRNA2T00105946001	GO:A0A078EAZ8	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	ncoils:Coil
PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	PFAM:PF03101	ProteinID:CDX98376	ProteinID:CDX98376.1	UniParc:UPI0004EDD1C2
MapMan:15.5.46	:	:	:	:	:

Description

BnaC06g17370D

Coordinates

chrLK031904:-:929097..930687

Molecular Weight (calculated)

27398.3 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.927

Length

237 amino acids

Sequence
(BLAST)

001: MGHNEMGESS GQAMIEQDEE NHNEIGEHSG EEMTLEQDEK VDPDSIPLEV ADMADEPFVG QEFESEAAAH GFYNAYATKV GFVIRVSKLS RSRHDGSPIG
101: RQLVCNKEGY RLPSKRDKVI RQRAETRVGC RAMILIRKES SGKWVITKFV KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE LMQQLAAEKK RAATYKRHLE
201: MLFDHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQV

Best Arabidopsis Sequence Match ( AT3G59470.3 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.