CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037723.1-P	Field mustard	nucleus	71.65	91.0
CDY30396	Canola	cytosol	27.56	86.42
CDY23353	Canola	cytosol	27.17	85.19
CDY23354	Canola	cytosol, mitochondrion, plastid	74.02	78.33
AT2G43280.1	Thale cress	cytosol	62.99	77.67
KRH62480	Soybean	nucleus	53.54	56.43
KRH56435	Soybean	nucleus	53.15	56.02
VIT_00s0174g00130.t01	Wine grape	cytosol	37.8	46.83
CDY28044	Canola	cytosol	36.61	46.5
CDY35937	Canola	nucleus	35.83	42.92
Solyc09g057880.2.1	Tomato	nucleus	37.01	36.02
CDX67797	Canola	nucleus	29.53	31.65
CDX98376	Canola	nucleus	29.53	31.65
CDY69788	Canola	nucleus	29.13	27.82
CDY06001	Canola	nucleus	29.13	26.43

Protein Annotations

EnsemblPlants:CDY30397	EnsemblPlantsGene:GSBRNA2T00045093001	GO:A0A078GYT7	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	ncoils:Coil
PANTHER:PTHR31669	PANTHER:PTHR31669:SF46	PFAM:PF03101	ProteinID:CDY30397	ProteinID:CDY30397.1	SEG:seg
UniParc:UPI0004EE2624	UniProt:A0A078GYT7	MapMan:15.5.46	:	:	:

Description

BnaA04g24980DBnaA04g24980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYT7]

Coordinates

chrLK032253:+:132037..136088

Molecular Weight (calculated)

29587.5 Da

IEP (calculated)

9.671

GRAVY (calculated)

-0.615

Length

254 amino acids

Sequence
(BLAST)

001: MYLKNTTTFS INTMSGLILS DRQNPVSKKI LSFHQFDCFP SLGFNFLDQF SFTVTIDSMA VEPREGTEFE SEEAAKMFYD DYSRSLGFVM RVMSCRRSER
101: DGRILARRFG CNKEGRCVSV RGKSGSVRKP RQSTREGCKA MVHVKYDRSG KWVVTKFVKE HNHPLVVEPR QARQSLDEKD KRIQELTIEL RNKKRLCAAY
201: KEQLDAFAKI VEEYSNRMSK RVESVVENLK EFEEIEFELL RSKQDAIYKP ALNV

Best Arabidopsis Sequence Match ( AT2G43280.1 )
(BLAST)

001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84J94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.