CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003377.1-P	Field mustard	nucleus	99.16	99.16
CDX98376	Canola	nucleus	98.73	98.73
CDY69788	Canola	nucleus	90.72	80.83
AT3G59470.2	Thale cress	cytosol	86.08	77.57
CDY06001	Canola	nucleus	91.56	77.5
PGSC0003DMT400069495	Potato	nucleus	61.18	57.77
VIT_05s0102g00690.t01	Wine grape	cytosol	62.03	55.06
KRH24623	Soybean	nucleus	57.81	52.09
KRH10126	Soybean	nucleus	57.81	46.6
KRH29624	Soybean	nucleus	56.54	45.42
CDY23353	Canola	cytosol	13.92	40.74
CDY30396	Canola	cytosol	13.92	40.74
CDY28044	Canola	cytosol	33.76	40.0
CDY35937	Canola	nucleus	34.18	38.21
CDY23354	Canola	cytosol, mitochondrion, plastid	29.96	29.58
CDY30397	Canola	cytosol, plastid	31.65	29.53

Protein Annotations

EnsemblPlants:CDX67797	EnsemblPlantsGene:GSBRNA2T00098991001	GO:A0A078BUB3	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	ncoils:Coil
PANTHER:PTHR31669	PANTHER:PTHR31669:SF71	PFAM:PF03101	ProteinID:CDX67797	ProteinID:CDX67797.1	UniParc:UPI0004EE0784
MapMan:15.5.46	:	:	:	:	:

Description

BnaA07g18370D

Coordinates

chrLK031787:-:2285991..2287076

Molecular Weight (calculated)

27411.3 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.939

Length

237 amino acids

Sequence
(BLAST)

001: MGHNEMGESS GQAMIEQDDE NHNEIGEHSG EEMNLEQDEK VDPDSIPLEV ADMADEPFVG QEFESEAAAH GFYNAYATKV GFVIRVSKLS RSRHDGSPIG
101: RQLVCNKEGY RLPSKRDKVI RQRAETRVGC RAMILIRKES SGKWVITKFV KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE LMQQLAAEKK RAATYKRHLE
201: MLFEHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQV

Best Arabidopsis Sequence Match ( AT3G59470.3 )
(BLAST)

001: MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS
101: KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCKAMILIR KENSGKWVIT KFVKEHNHSL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA
201: EKKRAATYKR HLEMLFEQIE QHNESLSKRI QHIVDNVRNL EQRDHQQNHQ V

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:F4J8B6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.