Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35937 | Canola | nucleus | 88.0 | 83.02 |
| VIT_00s0269g00010.t01 | Wine grape | nucleus | 57.5 | 72.33 |
| AT3G07500.1 | Thale cress | nucleus | 76.0 | 70.05 |
| VIT_00s0174g00120.t01 | Wine grape | nucleus | 67.5 | 54.22 |
| CDY23353 | Canola | cytosol | 20.5 | 50.62 |
| CDY30396 | Canola | cytosol | 20.5 | 50.62 |
| Solyc09g057870.2.1 | Tomato | cytosol | 34.5 | 40.83 |
| CDY23354 | Canola | cytosol, mitochondrion, plastid | 45.5 | 37.92 |
| CDY30397 | Canola | cytosol, plastid | 46.5 | 36.61 |
| CDX67797 | Canola | nucleus | 40.0 | 33.76 |
| CDX98376 | Canola | nucleus | 40.0 | 33.76 |
| CDY69788 | Canola | nucleus | 39.0 | 29.32 |
| CDY06001 | Canola | nucleus | 39.5 | 28.21 |
Protein Annotations
| EnsemblPlants:CDY28044 | EnsemblPlantsGene:GSBRNA2T00038984001 | GO:A0A078GSB1 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | ncoils:Coil |
| PANTHER:PTHR31669 | PANTHER:PTHR31669:SF46 | PFAM:PF03101 | ProteinID:CDY28044 | ProteinID:CDY28044.1 | SEG:seg |
| UniParc:UPI0004EB558B | UniProt:A0A078GSB1 | MapMan:15.5.46 | : | : | : |
Description
BnaC05g44460DBnaC05g44460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSB1]
Coordinates
chrLK032213:-:373625..374443
Molecular Weight (calculated)
22957.6 Da
IEP (calculated)
10.257
GRAVY (calculated)
-0.553
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MENIVTEEAS SVVEPFIGME FESEEAAKSF YDSYAKSTGF VMRVDAFRRS MRDGTVVWRK LVCNKEGFRR SRPRRSESRK PRAITREGCK ALIVVKKDKS
101: GKWIVTKFVK EHNHPLLSLL ANARRSSHIS QSPDEKDAKI RELSTELSRE RKRCAALQQQ LDMVLNVMEE HANHLSVNIN NVIQSVKEIE SITFTKSLIS
101: GKWIVTKFVK EHNHPLLSLL ANARRSSHIS QSPDEKDAKI RELSTELSRE RKRCAALQQQ LDMVLNVMEE HANHLSVNIN NVIQSVKEIE SITFTKSLIS
001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.