CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	CDX89437	AT4G25200.1	21798944
AT5G02050.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47064	Canola	plastid	92.56	91.06
CDY47065	Canola	plastid	44.63	76.6
CDY38743	Canola	cytosol	43.39	68.63
Bra029083.1-P	Field mustard	mitochondrion	47.52	60.53
CDY70180	Canola	plastid	61.16	57.14
CDY43065	Canola	plastid	60.33	55.73
CDY43064	Canola	plastid	56.61	55.69
CDY70179	Canola	plastid	55.79	54.88
CDX80800	Canola	mitochondrion	46.69	43.63
CDY55117	Canola	mitochondrion, plastid	45.45	42.47
AT5G02050.1	Thale cress	mitochondrion, plastid	44.63	40.45
KRH49169	Soybean	endoplasmic reticulum	40.08	38.34
KRH00042	Soybean	nucleus	39.67	37.8
HORVU0Hr1G006190.1	Barley	cytosol	26.86	36.52
HORVU3Hr1G011490.1	Barley	cytosol	17.77	32.33
Os01t0143300-01	Rice	mitochondrion	34.71	31.82
CDY20481	Canola	mitochondrion	32.23	31.45
CDX74831	Canola	mitochondrion	32.23	31.33
TraesCS3A01G059200.1	Wheat	mitochondrion	33.06	30.89
GSMUA_Achr4P16890_001	Banana	mitochondrion	33.47	30.8
TraesCS3B01G071700.1	Wheat	mitochondrion	32.64	30.5
HORVU3Hr1G011460.1	Barley	mitochondrion	31.82	30.32
EES00334	Sorghum	mitochondrion, plastid	33.06	30.08
Zm00001d039883_P001	Maize	mitochondrion	30.99	29.64
CDY65769	Canola	mitochondrion, plastid	31.41	29.34
CDX70103	Canola	mitochondrion	30.58	29.02
CDX98894	Canola	mitochondrion	30.58	28.68
CDX76083	Canola	mitochondrion	30.58	28.46
CDY35045	Canola	mitochondrion	28.1	28.1
CDY33373	Canola	mitochondrion	27.27	27.16
CDY11346	Canola	mitochondrion	28.93	26.82
CDY39948	Canola	mitochondrion	26.45	26.45
Os01t0143700-00	Rice	mitochondrion	28.1	26.25
PGSC0003DMT400022948	Potato	mitochondrion	26.86	25.9
CDX80981	Canola	mitochondrion	27.69	25.87
CDX87337	Canola	mitochondrion	25.62	25.62
Solyc09g011250.2.1	Tomato	mitochondrion	26.45	25.5
EES00333	Sorghum	plastid	28.51	25.37
CDX68804	Canola	cytosol	12.4	25.21
CDY13466	Canola	mitochondrion	24.38	24.08
CDX72338	Canola	plastid	24.79	24.0
TraesCS3A01G059600.1	Wheat	plastid	26.86	23.9
TraesCS3B01G072200.1	Wheat	plastid	26.45	23.7
HORVU1Hr1G072660.2	Barley	mitochondrion	24.79	23.44
Zm00001d008610_P001	Maize	plastid	26.45	23.36
TraesCS3D01G059900.1	Wheat	plastid	26.03	23.33
Os01t0143800-01	Rice	plastid	26.03	22.91
HORVU3Hr1G011560.1	Barley	plastid	26.86	22.57
TraesCS1D01G281100.1	Wheat	mitochondrion	22.73	21.83
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	24.79	21.43
EES19636	Sorghum	mitochondrion	22.31	21.09
TraesCS3B01G071900.1	Wheat	mitochondrion	26.45	20.65
TraesCS1B01G291000.1	Wheat	mitochondrion	21.9	20.38
TraesCS3D01G059500.1	Wheat	mitochondrion	26.03	20.32
HORVU3Hr1G085260.1	Barley	cytosol	13.22	20.25
Os05t0456000-01	Rice	mitochondrion	21.49	20.16
TraesCS3D01G059800.1	Wheat	mitochondrion	24.38	20.07
TraesCS3D01G059700.1	Wheat	mitochondrion	23.14	19.93
TraesCS3D01G059600.1	Wheat	mitochondrion	23.55	19.66
TraesCS3B01G072000.1	Wheat	mitochondrion	21.9	19.63
HORVU3Hr1G011510.1	Barley	plastid	23.14	13.83
HORVU3Hr1G011580.1	Barley	mitochondrion	7.44	10.98

Protein Annotations

EnsemblPlants:CDY38740	EnsemblPlantsGene:GSBRNA2T00066527001	Gene3D:3.10.280.10	GO:A0A078HJQ5	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	ProteinID:CDY38740	ProteinID:CDY38740.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0004EF1F5E	UniProt:A0A078HJQ5	MapMan:35.1	:

Description

BnaC03g15090DBnaC03g15090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJQ5]

Coordinates

chrLK032431:-:174946..175983

Molecular Weight (calculated)

27243.2 Da

IEP (calculated)

4.304

GRAVY (calculated)

-0.159

Length

242 amino acids

Sequence
(BLAST)

001: MSLFCGVSVA TLPFGAARSP PASLQTGAHR VTFGRSHRFS RLISFSALSA ITPTSNLLSL LESEIESSVV NEDAPDNEEL PEWFTFQIID LPSERVVRLI
101: RKFDDETIIV YIDPSAHLFD EQPKLPQDDE ELLAGIPMVV DVSKDDDGLC LEFGVNAFAA EIVIDSLVVQ QPHEPKYPYQ GPDFDDLDEN LQRAFHKFLE
201: IRGINLTLTN FLADYMVNKD KRSHLQWLKD VKSFVLTSEN SQ

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.