CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	CDX89437	AT4G25200.1	21798944
AT5G02050.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029051.1-P	Field mustard	plastid	99.62	99.62
CDY70180	Canola	plastid	94.66	95.75
CDY70179	Canola	plastid	66.41	70.73
CDY43064	Canola	plastid	66.03	70.33
CDY47065	Canola	plastid	34.73	64.54
CDY38740	Canola	plastid	55.73	60.33
CDY47064	Canola	plastid	56.11	59.76
CDY38743	Canola	cytosol	31.68	54.25
CDX80800	Canola	mitochondrion	45.8	46.33
CDY55117	Canola	mitochondrion, plastid	45.04	45.56
AT5G02050.1	Thale cress	mitochondrion, plastid	44.66	43.82
KRH00042	Soybean	nucleus	35.11	36.22
KRH49169	Soybean	endoplasmic reticulum	34.35	35.57
HORVU0Hr1G006190.1	Barley	cytosol	23.66	34.83
GSMUA_Achr4P16890_001	Banana	mitochondrion	32.06	31.94
Os01t0143300-01	Rice	mitochondrion	30.92	30.68
CDY20481	Canola	mitochondrion	28.63	30.24
CDY65769	Canola	mitochondrion, plastid	29.77	30.12
CDX76083	Canola	mitochondrion	29.77	30.0
CDX98894	Canola	mitochondrion	29.39	29.84
CDX70103	Canola	mitochondrion	29.01	29.8
HORVU3Hr1G011460.1	Barley	mitochondrion	28.63	29.53
TraesCS3A01G059200.1	Wheat	mitochondrion	29.01	29.34
TraesCS3B01G071700.1	Wheat	mitochondrion	29.01	29.34
CDX74831	Canola	mitochondrion	27.86	29.32
HORVU3Hr1G011490.1	Barley	cytosol	14.5	28.57
CDX68804	Canola	cytosol	12.6	27.73
Zm00001d039883_P001	Maize	mitochondrion	26.72	27.67
EES00334	Sorghum	mitochondrion, plastid	27.86	27.44
CDY11346	Canola	mitochondrion	26.72	26.82
PGSC0003DMT400022948	Potato	mitochondrion	24.81	25.9
Solyc09g011250.2.1	Tomato	mitochondrion	24.81	25.9
Os01t0143700-00	Rice	mitochondrion	25.57	25.87
EES00333	Sorghum	plastid	26.72	25.74
CDX80981	Canola	mitochondrion	25.19	25.48
HORVU1Hr1G072660.2	Barley	mitochondrion	24.81	25.39
CDY39948	Canola	mitochondrion	23.28	25.21
CDX87337	Canola	mitochondrion	23.28	25.21
CDY35045	Canola	mitochondrion	22.52	24.38
TraesCS1D01G281100.1	Wheat	mitochondrion	23.28	24.21
Zm00001d008610_P001	Maize	plastid	25.19	24.09
CDY33373	Canola	mitochondrion	22.14	23.87
TraesCS3A01G059600.1	Wheat	plastid	24.43	23.53
Os01t0143800-01	Rice	plastid	24.43	23.27
TraesCS1B01G291000.1	Wheat	mitochondrion	22.9	23.08
CDY13466	Canola	mitochondrion	21.37	22.86
CDX72338	Canola	plastid	21.76	22.8
EES19636	Sorghum	mitochondrion	22.14	22.66
TraesCS3B01G072200.1	Wheat	plastid	23.28	22.59
TraesCS3D01G059900.1	Wheat	plastid	23.28	22.59
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	24.05	22.5
HORVU3Hr1G011560.1	Barley	plastid	24.43	22.22
Os05t0456000-01	Rice	mitochondrion	21.37	21.71
TraesCS3D01G059800.1	Wheat	mitochondrion	24.05	21.43
TraesCS3D01G059600.1	Wheat	mitochondrion	23.28	21.03
HORVU3Hr1G085260.1	Barley	cytosol	12.6	20.89
TraesCS3B01G072000.1	Wheat	mitochondrion	21.37	20.74
TraesCS3B01G071900.1	Wheat	mitochondrion	24.05	20.32
TraesCS3D01G059500.1	Wheat	mitochondrion	24.05	20.32
TraesCS3D01G059700.1	Wheat	mitochondrion	21.37	19.93
HORVU3Hr1G011580.1	Barley	mitochondrion	9.92	15.85
HORVU3Hr1G011510.1	Barley	plastid	23.66	15.31

Protein Annotations

EnsemblPlants:CDY43065	EnsemblPlantsGene:GSBRNA2T00075898001	Gene3D:3.10.280.10	GO:A0A078HX75	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	ProteinID:CDY43065	ProteinID:CDY43065.1
SUPFAM:SSF54529	UniParc:UPI0004EEA286	UniProt:A0A078HX75	MapMan:35.1	:	:

Description

BnaA03g12120DBnaA03g12120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX75]

Coordinates

chrLK032543:+:262926..264032

Molecular Weight (calculated)

29595.2 Da

IEP (calculated)

4.583

GRAVY (calculated)

-0.268

Length

262 amino acids

Sequence
(BLAST)

001: MSLFCGASST VATLPFRAVR PPLSLQTGAQ RVTLGGGSRQ FSRASSLISL SRGSKLSAIT AQENLVSVLE SQIESAVVNE ETPDDGEEED KLPEGFPFRI
101: IDTPGERVFF LTRKFENETI LVEIDPSAPF DEGKKEEPND PQAEVLIGIS MVINVSKHDY APCLEFLANA YIDEIVIHAI YVRQPQELSY PFLAKKIKKF
201: WYPYEGPDFV DLDENLQKAF HRFLEIRGIK PNITEFVTDY LANKDRREQL QLLKDVKTFV DM

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.