Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02050.1 | CDX89437 | AT4G25200.1 | 21798944 |
| AT5G02050.1 | CDY03368 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029081.1-P | Field mustard | plastid | 92.16 | 61.57 |
| CDY38740 | Canola | plastid | 68.63 | 43.39 |
| CDY47064 | Canola | plastid | 69.28 | 43.09 |
| CDY47065 | Canola | plastid | 35.95 | 39.01 |
| CDY70180 | Canola | plastid | 56.21 | 33.2 |
| HORVU0Hr1G006190.1 | Barley | cytosol | 37.91 | 32.58 |
| CDX80800 | Canola | mitochondrion | 54.9 | 32.43 |
| CDY43065 | Canola | plastid | 54.25 | 31.68 |
| CDY55117 | Canola | mitochondrion, plastid | 53.59 | 31.66 |
| CDY43064 | Canola | plastid | 50.33 | 31.3 |
| CDY70179 | Canola | plastid | 48.37 | 30.08 |
| HORVU3Hr1G011490.1 | Barley | cytosol | 26.14 | 30.08 |
| AT5G02050.1 | Thale cress | mitochondrion, plastid | 51.63 | 29.59 |
| KRH49169 | Soybean | endoplasmic reticulum | 47.71 | 28.85 |
| KRH00042 | Soybean | nucleus | 46.41 | 27.95 |
| Os01t0143300-01 | Rice | mitochondrion | 41.18 | 23.86 |
| CDX76083 | Canola | mitochondrion | 40.52 | 23.85 |
| CDY65769 | Canola | mitochondrion, plastid | 39.87 | 23.55 |
| CDY20481 | Canola | mitochondrion | 37.91 | 23.39 |
| CDX74831 | Canola | mitochondrion | 37.91 | 23.29 |
| GSMUA_Achr4P16890_001 | Banana | mitochondrion | 39.87 | 23.19 |
| TraesCS3A01G059200.1 | Wheat | mitochondrion | 39.22 | 23.17 |
| HORVU3Hr1G011460.1 | Barley | mitochondrion | 37.91 | 22.83 |
| TraesCS3B01G071700.1 | Wheat | mitochondrion | 38.56 | 22.78 |
| CDX68804 | Canola | cytosol | 16.99 | 21.85 |
| EES00334 | Sorghum | mitochondrion, plastid | 37.91 | 21.8 |
| Os01t0143700-00 | Rice | mitochondrion | 36.6 | 21.62 |
| CDX70103 | Canola | mitochondrion | 35.29 | 21.18 |
| PGSC0003DMT400022948 | Potato | mitochondrion | 34.64 | 21.12 |
| CDX98894 | Canola | mitochondrion | 35.29 | 20.93 |
| Solyc09g011250.2.1 | Tomato | mitochondrion | 33.99 | 20.72 |
| CDX87337 | Canola | mitochondrion | 32.68 | 20.66 |
| CDY39948 | Canola | mitochondrion | 32.68 | 20.66 |
| CDY35045 | Canola | mitochondrion | 32.68 | 20.66 |
| Zm00001d039883_P001 | Maize | mitochondrion | 33.99 | 20.55 |
| CDY11346 | Canola | mitochondrion | 34.64 | 20.31 |
| CDY33373 | Canola | mitochondrion | 31.37 | 19.75 |
| TraesCS3A01G059600.1 | Wheat | plastid | 33.99 | 19.12 |
| CDX80981 | Canola | mitochondrion | 32.03 | 18.92 |
| TraesCS3D01G059900.1 | Wheat | plastid | 33.33 | 18.89 |
| TraesCS3B01G072200.1 | Wheat | plastid | 32.03 | 18.15 |
| EES00333 | Sorghum | plastid | 31.37 | 17.65 |
| HORVU3Hr1G011470.3 | Barley | mitochondrion, plastid | 32.03 | 17.5 |
| Zm00001d008610_P001 | Maize | plastid | 30.72 | 17.15 |
| HORVU3Hr1G085260.1 | Barley | cytosol | 17.65 | 17.09 |
| HORVU3Hr1G011560.1 | Barley | plastid | 32.03 | 17.01 |
| CDY13466 | Canola | mitochondrion | 26.8 | 16.73 |
| TraesCS3D01G059700.1 | Wheat | mitochondrion | 30.72 | 16.73 |
| TraesCS3B01G072000.1 | Wheat | mitochondrion | 29.41 | 16.67 |
| CDX72338 | Canola | plastid | 26.8 | 16.4 |
| Os01t0143800-01 | Rice | plastid | 29.41 | 16.36 |
| EES19636 | Sorghum | mitochondrion | 26.8 | 16.02 |
| HORVU1Hr1G072660.2 | Barley | mitochondrion | 26.8 | 16.02 |
| TraesCS3D01G059800.1 | Wheat | mitochondrion | 30.07 | 15.65 |
| Os05t0456000-01 | Rice | mitochondrion | 26.14 | 15.5 |
| TraesCS3B01G071900.1 | Wheat | mitochondrion | 30.07 | 14.84 |
| TraesCS1B01G291000.1 | Wheat | mitochondrion | 24.84 | 14.62 |
| TraesCS3D01G059500.1 | Wheat | mitochondrion | 28.76 | 14.19 |
| TraesCS3D01G059600.1 | Wheat | mitochondrion | 26.8 | 14.14 |
| TraesCS1D01G281100.1 | Wheat | mitochondrion | 22.88 | 13.89 |
| HORVU3Hr1G011510.1 | Barley | plastid | 25.49 | 9.63 |
| HORVU3Hr1G011580.1 | Barley | mitochondrion | 6.54 | 6.1 |
Protein Annotations
| EnsemblPlants:CDY38743 | EnsemblPlantsGene:GSBRNA2T00066530001 | Gene3D:3.10.280.10 | GO:A0A078HPL9 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005759 | InterPro:IPR036561 | InterPro:MAM33 |
| InterPro:MAM33_sf | PANTHER:PTHR10826 | PANTHER:PTHR10826:SF12 | PFAM:PF02330 | ProteinID:CDY38743 | ProteinID:CDY38743.1 |
| SUPFAM:SSF54529 | UniParc:UPI0004EE8CE6 | UniProt:A0A078HPL9 | MapMan:35.1 | : | : |
Description
BnaC03g15060DBnaC03g15060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPL9]
Coordinates
chrLK032431:-:186516..187199
Molecular Weight (calculated)
17741.2 Da
IEP (calculated)
5.098
GRAVY (calculated)
-0.484
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDRPTERVL HLTRKFGDET ILVLIDRPKV PQDDEELVFG IPMGVYVSKD DDGLRLKFGV KAFADEIVID SVAVQQRRES KWSYQGPDID DLDENLQKAF
101: NKFLEIRGIN PTITDFLADY LANKDKREHL RWLKDVKSFV DILKLSNKSE TCK
101: NKFLEIRGIN PTITDFLADY LANKDKREHL RWLKDVKSFV DILKLSNKSE TCK
001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK
Arabidopsis Description
At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.