CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	CDX89437	AT4G25200.1	21798944
AT5G02050.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005705.1-P	Field mustard	mitochondrion, plastid	99.61	99.61
CDX80800	Canola	mitochondrion	94.98	94.98
AT5G02050.1	Thale cress	mitochondrion, plastid	80.69	78.28
CDY38743	Canola	cytosol	31.66	53.59
CDY70180	Canola	plastid	47.88	47.88
KRH49169	Soybean	endoplasmic reticulum	46.33	47.43
KRH00042	Soybean	nucleus	45.56	46.46
CDY47064	Canola	plastid	44.02	46.34
CDY38740	Canola	plastid	42.47	45.45
CDY43065	Canola	plastid	45.56	45.04
HORVU0Hr1G006190.1	Barley	cytosol	30.89	44.94
CDY47065	Canola	plastid	24.32	44.68
CDY70179	Canola	plastid	42.08	44.31
CDY43064	Canola	plastid	42.08	44.31
GSMUA_Achr4P16890_001	Banana	mitochondrion	43.24	42.59
CDY20481	Canola	mitochondrion	37.45	39.11
HORVU3Hr1G011460.1	Barley	mitochondrion	38.22	38.98
TraesCS3A01G059200.1	Wheat	mitochondrion	38.61	38.61
CDX74831	Canola	mitochondrion	37.07	38.55
TraesCS3B01G071700.1	Wheat	mitochondrion	38.22	38.22
CDX76083	Canola	mitochondrion	37.84	37.69
CDY65769	Canola	mitochondrion, plastid	37.45	37.45
CDX70103	Canola	mitochondrion	36.29	36.86
Os01t0143300-01	Rice	mitochondrion	37.07	36.36
EES00334	Sorghum	mitochondrion, plastid	37.07	36.09
Zm00001d039883_P001	Maize	mitochondrion	35.14	35.97
CDX98894	Canola	mitochondrion	35.52	35.66
CDY11346	Canola	mitochondrion	35.52	35.25
CDX80981	Canola	mitochondrion	33.98	33.98
PGSC0003DMT400022948	Potato	mitochondrion	32.82	33.86
HORVU3Hr1G011490.1	Barley	cytosol	16.99	33.08
Solyc09g011250.2.1	Tomato	mitochondrion	32.05	33.07
Os01t0143700-00	Rice	mitochondrion	32.43	32.43
HORVU1Hr1G072660.2	Barley	mitochondrion	31.66	32.03
TraesCS1D01G281100.1	Wheat	mitochondrion	30.12	30.95
TraesCS1B01G291000.1	Wheat	mitochondrion	30.5	30.38
CDX87337	Canola	mitochondrion	28.19	30.17
HORVU3Hr1G085260.1	Barley	cytosol	18.15	29.75
Os05t0456000-01	Rice	mitochondrion	29.34	29.46
CDY39948	Canola	mitochondrion	27.41	29.34
CDY35045	Canola	mitochondrion	27.41	29.34
CDY33373	Canola	mitochondrion	26.25	27.98
Zm00001d008610_P001	Maize	plastid	29.34	27.74
TraesCS3A01G059600.1	Wheat	plastid	28.96	27.57
TraesCS3B01G072200.1	Wheat	plastid	28.19	27.04
Os01t0143800-01	Rice	plastid	28.57	26.91
EES00333	Sorghum	plastid	28.19	26.84
TraesCS3D01G059900.1	Wheat	plastid	27.8	26.67
EES19636	Sorghum	mitochondrion	26.25	26.56
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	27.8	25.71
TraesCS3D01G059800.1	Wheat	mitochondrion	28.96	25.51
HORVU3Hr1G011560.1	Barley	plastid	28.19	25.35
CDX68804	Canola	cytosol	11.58	25.21
TraesCS3B01G072000.1	Wheat	mitochondrion	25.48	24.44
TraesCS3D01G059700.1	Wheat	mitochondrion	26.25	24.2
TraesCS3B01G071900.1	Wheat	mitochondrion	28.19	23.55
TraesCS3D01G059600.1	Wheat	mitochondrion	26.25	23.45
TraesCS3D01G059500.1	Wheat	mitochondrion	27.8	23.23
CDY13466	Canola	mitochondrion	21.62	22.86
CDX72338	Canola	plastid	22.01	22.8
HORVU3Hr1G011580.1	Barley	mitochondrion	10.81	17.07
HORVU3Hr1G011510.1	Barley	plastid	23.94	15.31

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	GO:A0A078J0B9	UniProt:A0A078J0B9	EnsemblPlants:CDY55117	ProteinID:CDY55117
ProteinID:CDY55117.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	EnsemblPlantsGene:GSBRNA2T00016416001	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf
PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	SUPFAM:SSF54529	UniParc:UPI0004EE2F4D	SEG:seg

Description

BnaA03g54960DBnaA03g54960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0B9]

Coordinates

chrLK033376:-:28412..29633

Molecular Weight (calculated)

28907.4 Da

IEP (calculated)

4.044

GRAVY (calculated)

-0.386

Length

259 amino acids

Sequence
(BLAST)

001: MSMFRRASSS LATLAFRAVR SPVSLRNGAV SAERLFLGSR QLSRGSVFSF SRFSTESAVA KTTADENLVS VLESEIECAV NEEAPDENVI EDVPEGFPFE
101: IVDTPGERTL LLQRKFEDET IQVEVDSCAT YDDDEEEAEQ AEANDDEDEE NSVKLRIPMV VSVAKGDGVC LEFGVSAYAD EIVIDSLSIK HPQGSENELA
201: YEGPDFDDLD ENLQKAFHRF LEIRGIKPSF TGFLADYVAN KDSREYLQWL KDVKSFVEK

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.