CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	CDX89437	AT4G25200.1	21798944
AT5G02050.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029050.1-P	Field mustard	plastid	100.0	100.0
CDY70179	Canola	plastid	96.75	96.75
CDY70180	Canola	plastid	69.92	66.41
CDY43065	Canola	plastid	70.33	66.03
CDY47065	Canola	plastid	36.18	63.12
CDY38740	Canola	plastid	55.69	56.61
CDY47064	Canola	plastid	54.88	54.88
CDY38743	Canola	cytosol	31.3	50.33
CDX80800	Canola	mitochondrion	44.72	42.47
CDY55117	Canola	mitochondrion, plastid	44.31	42.08
AT5G02050.1	Thale cress	mitochondrion, plastid	43.09	39.7
HORVU0Hr1G006190.1	Barley	cytosol	26.02	35.96
KRH49169	Soybean	endoplasmic reticulum	34.96	33.99
KRH00042	Soybean	nucleus	34.96	33.86
GSMUA_Achr4P16890_001	Banana	mitochondrion	33.33	31.18
Os01t0143300-01	Rice	mitochondrion	32.93	30.68
TraesCS3A01G059200.1	Wheat	mitochondrion	32.11	30.5
HORVU3Hr1G011460.1	Barley	mitochondrion	31.3	30.32
CDY65769	Canola	mitochondrion, plastid	31.71	30.12
TraesCS3B01G071700.1	Wheat	mitochondrion	31.71	30.12
CDX76083	Canola	mitochondrion	31.71	30.0
CDY20481	Canola	mitochondrion	30.08	29.84
CDX74831	Canola	mitochondrion	29.27	28.92
EES00334	Sorghum	mitochondrion, plastid	30.89	28.57
HORVU3Hr1G011490.1	Barley	cytosol	15.04	27.82
Zm00001d039883_P001	Maize	mitochondrion	28.46	27.67
CDX98894	Canola	mitochondrion	28.05	26.74
CDX70103	Canola	mitochondrion	27.64	26.67
Os01t0143700-00	Rice	mitochondrion	27.24	25.87
PGSC0003DMT400022948	Potato	mitochondrion	25.2	24.7
EES00333	Sorghum	plastid	27.24	24.63
HORVU1Hr1G072660.2	Barley	mitochondrion	25.61	24.61
CDY11346	Canola	mitochondrion	26.02	24.52
Solyc09g011250.2.1	Tomato	mitochondrion	24.39	23.9
TraesCS1D01G281100.1	Wheat	mitochondrion	24.39	23.81
Zm00001d008610_P001	Maize	plastid	26.02	23.36
TraesCS3A01G059600.1	Wheat	plastid	25.2	22.79
HORVU3Hr1G085260.1	Barley	cytosol	14.63	22.78
CDY35045	Canola	mitochondrion	22.36	22.73
TraesCS1B01G291000.1	Wheat	mitochondrion	23.98	22.69
Os05t0456000-01	Rice	mitochondrion	23.58	22.48
CDX80981	Canola	mitochondrion	23.58	22.39
CDY39948	Canola	mitochondrion	21.95	22.31
CDX87337	Canola	mitochondrion	21.95	22.31
TraesCS3D01G059900.1	Wheat	plastid	24.39	22.22
TraesCS3B01G072200.1	Wheat	plastid	24.39	22.22
CDY33373	Canola	mitochondrion	21.95	22.22
Os01t0143800-01	Rice	plastid	24.8	22.18
CDX68804	Canola	cytosol	10.57	21.85
HORVU3Hr1G011560.1	Barley	plastid	25.2	21.53
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	24.39	21.43
EES19636	Sorghum	mitochondrion	21.95	21.09
TraesCS3D01G059800.1	Wheat	mitochondrion	24.39	20.41
CDX72338	Canola	plastid	20.33	20.0
CDY13466	Canola	mitochondrion	19.92	20.0
TraesCS3D01G059600.1	Wheat	mitochondrion	23.58	20.0
TraesCS3B01G072000.1	Wheat	mitochondrion	21.14	19.26
TraesCS3D01G059700.1	Wheat	mitochondrion	21.14	18.51
TraesCS3D01G059500.1	Wheat	mitochondrion	23.17	18.39
TraesCS3B01G071900.1	Wheat	mitochondrion	22.76	18.06
HORVU3Hr1G011510.1	Barley	plastid	23.98	14.57
HORVU3Hr1G011580.1	Barley	mitochondrion	9.35	14.02

Protein Annotations

EnsemblPlants:CDY43064	EnsemblPlantsGene:GSBRNA2T00075897001	Gene3D:3.10.280.10	GO:A0A078I0J3	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	ProteinID:CDY43064	ProteinID:CDY43064.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI000253FF6A	UniProt:A0A078I0J3	MapMan:35.1	:

Description

BnaA03g12110DBnaA03g12110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0J3]

Coordinates

chrLK032543:-:261711..262634

Molecular Weight (calculated)

27803.9 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.247

Length

246 amino acids

Sequence
(BLAST)

001: MSLFCGASST VATLPFRAVR SRVTLQTGAQ RVTLGGGSPQ FSRASSLISL SRGSKLSAIT ADENLVSVLE SQIESAVVKE APEEDEFPEW FPFYIVDADK
101: DRVVYLVRKF ENETIYVRIE LSRSLGDDKE KEEPKDPQPE VLTGIPIFIS VIKDDDGPSL EFIANAYVHE IVIDAVYVES PLELTWRYKG PDFADLDENL
201: QKAYHRFLEI RGIKPNITEF MADYMADKAG RERLHWLNDV KSFLDM

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.