CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026096.1-P	Field mustard	mitochondrion	95.06	95.45
CDY35045	Canola	mitochondrion	95.06	95.45
AT1G15870.1	Thale cress	mitochondrion	83.13	83.47
CDY39948	Canola	mitochondrion	68.72	69.01
CDX87337	Canola	mitochondrion	67.08	67.36
KRH44530	Soybean	mitochondrion	51.44	54.59
VIT_09s0002g09050.t01	Wine grape	cytosol	42.8	53.89
PGSC0003DMT400036809	Potato	mitochondrion	47.33	50.0
KRH47379	Soybean	mitochondrion	42.39	49.76
Solyc03g117080.2.1	Tomato	mitochondrion	46.91	49.57
CDX68804	Canola	cytosol	19.34	39.5
CDY13466	Canola	mitochondrion	32.1	31.84
CDY38743	Canola	cytosol	19.75	31.37
CDX72338	Canola	plastid	31.69	30.8
CDY47064	Canola	plastid	29.22	28.86
CDY20481	Canola	mitochondrion	28.81	28.23
CDX74831	Canola	mitochondrion	28.81	28.11
CDY38740	Canola	plastid	27.16	27.27
CDX80800	Canola	mitochondrion	27.98	26.25
CDY55117	Canola	mitochondrion, plastid	27.98	26.25
CDY47065	Canola	plastid	15.23	26.24
CDY11346	Canola	mitochondrion	26.34	24.52
CDY65769	Canola	mitochondrion, plastid	25.93	24.32
CDX76083	Canola	mitochondrion	25.93	24.23
CDX70103	Canola	mitochondrion	24.69	23.53
CDX80981	Canola	mitochondrion	24.69	23.17
CDX98894	Canola	mitochondrion	24.28	22.87
CDY43065	Canola	plastid	23.87	22.14
CDY43064	Canola	plastid	22.22	21.95
CDY70180	Canola	plastid	23.05	21.62
CDY70179	Canola	plastid	21.4	21.14

Protein Annotations

EnsemblPlants:CDY33373	EnsemblPlantsGene:GSBRNA2T00054219001	Gene3D:3.10.280.10	GO:A0A078H948	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF16	PFAM:PF02330	ProteinID:CDY33373	ProteinID:CDY33373.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0004EE26A3	UniProt:A0A078H948	MapMan:35.1	:

Description

BnaC05g12100DBnaC05g12100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H948]

Coordinates

chrLK032312:-:301063..302246

Molecular Weight (calculated)

28181.4 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.529

Length

243 amino acids

Sequence
(BLAST)

001: MSRLLRHLRR TVISARLLSP SFSYRNPRIC LQPIQNSSFL IVPKFLSSGS YVSEMRKSAF EGNILRLIRS EIQSELDHSP PLQPEDRFGP FTVDERPGEQ
101: WVSLRRKYGD TEDIKIEATM FDGSVPSSKS TSSDPEDVQL HITFVVNIFK DGQTLEIMCS AWPDTIQISK FFVRKSSKNS PNAYVGPEFE EMEDELQDSV
201: YQFLEERGIS DDLAVFLHQY MKNKDKAEYI RWMETVKSYV EQK

Best Arabidopsis Sequence Match ( AT1G15870.1 )
(BLAST)

001: MARLLRCLRR SFIFSSSTSI AYRNPRICVQ SNQSYIFLSS RKFLSSGSYV SEMRRTAFEG NILRLIRLEI QSELDHSPIL QPEESFGPFT VDERPGEQWI
101: SLRRKFGEKE DIKIEATMFD GSVPSSKSTT SDPEDVQLHI TFIVNISKGD GETLEIMCSA WPDTIQITKF FVRKSSQNSP NAYIGPEFQE MEDELQDSVY
201: RFLEERGISD DLAEFLHQYM KNKDKAEYIR WMETVKSYVE QK

Arabidopsis Description

At1g15870/F7H2_19 [Source:UniProtKB/TrEMBL;Acc:Q9LMP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.