Factsheet for PGSC0003DMT400036809

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117080.2.1	Tomato	mitochondrion	97.39	97.39
VIT_09s0002g09050.t01	Wine grape	cytosol	53.04	63.21
KRH44530	Soybean	mitochondrion	55.22	55.46
AT1G15870.1	Thale cress	mitochondrion	52.17	49.59
KRH47379	Soybean	mitochondrion	44.35	49.28
CDY35045	Canola	mitochondrion	50.43	47.93
AT1G80720.2	Thale cress	mitochondrion	50.0	47.52
Bra026096.1-P	Field mustard	mitochondrion	50.0	47.52
CDY33373	Canola	mitochondrion	50.0	47.33
CDX87337	Canola	mitochondrion	49.57	47.11
Bra035158.1-P	Field mustard	mitochondrion	49.13	46.69
CDY39948	Canola	mitochondrion	48.26	45.87
PGSC0003DMT400067216	Potato	mitochondrion	43.48	42.37
PGSC0003DMT400055876	Potato	mitochondrion, plastid	27.39	24.71
PGSC0003DMT400022948	Potato	mitochondrion	23.04	21.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400036809	EnsemblPlantsGene:PGSC0003DMG400014192	EntrezGene:102600873	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF16	PFAM:PF02330	PGSC:PGSC0003DMG400014192	RefSeq:XP_006341366.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0002958809	UniProt:M1B493	MapMan:35.2	:

Description

Mitochondrial glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014192]

Coordinates

chr3:-:56888976..56891846

Molecular Weight (calculated)

27080.7 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.472

Length

230 amino acids

Sequence
(BLAST)

001: MAMARRLVRP LRGIAKRVLL QQQPQPVIFN FTRNYISEMR REAFEENILR LLRYEIRYEL EHSPPSQPIT KFDSFIIDER AGEQWIKLNK KFGENEEIKV
101: EVTMFDASIP VQKGSDVSAA DDVQLHITMI VNVLKGEGNE VLEFVCSAWP NSVEIRKVYM RRQNGIVDQP YVGPPFKELD DELQNSLYDF LETRGISDEL
201: CAFLHQYMKN KDKLEFVRWM EKAKSFIEKK

Best Arabidopsis Sequence Match ( AT1G15870.1 )
(BLAST)

001: MARLLRCLRR SFIFSSSTSI AYRNPRICVQ SNQSYIFLSS RKFLSSGSYV SEMRRTAFEG NILRLIRLEI QSELDHSPIL QPEESFGPFT VDERPGEQWI
101: SLRRKFGEKE DIKIEATMFD GSVPSSKSTT SDPEDVQLHI TFIVNISKGD GETLEIMCSA WPDTIQITKF FVRKSSQNSP NAYIGPEFQE MEDELQDSVY
201: RFLEERGISD DLAEFLHQYM KNKDKAEYIR WMETVKSYVE QK

Arabidopsis Description

At1g15870/F7H2_19 [Source:UniProtKB/TrEMBL;Acc:Q9LMP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.