Factsheet for PGSC0003DMT400055876

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g079930.2.1	Tomato	plastid	92.16	91.09
VIT_13s0019g02350.t01	Wine grape	mitochondrion	69.41	69.96
HORVU0Hr1G006190.1	Barley	cytosol	41.18	58.99
KRH15056	Soybean	mitochondrion	52.55	52.96
KRH73081	Soybean	mitochondrion	52.55	52.96
HORVU3Hr1G011460.1	Barley	mitochondrion	49.8	50.0
TraesCS3B01G071700.1	Wheat	mitochondrion	49.8	49.03
TraesCS3A01G059200.1	Wheat	mitochondrion	49.8	49.03
Os01t0143300-01	Rice	mitochondrion	50.59	48.86
GSMUA_Achr4P16890_001	Banana	mitochondrion	50.2	48.67
Zm00001d039883_P001	Maize	mitochondrion	45.88	46.25
EES00334	Sorghum	mitochondrion, plastid	48.24	46.24
AT5G05990.1	Thale cress	mitochondrion	43.14	42.47
CDX80981	Canola	mitochondrion	43.14	42.47
CDX70103	Canola	mitochondrion	42.35	42.35
Bra009157.1-P	Field mustard	mitochondrion	41.57	42.23
HORVU3Hr1G085260.1	Barley	cytosol	25.88	41.77
CDX98894	Canola	mitochondrion	41.96	41.47
Bra005873.1-P	Field mustard	mitochondrion	42.35	41.38
CDY11346	Canola	mitochondrion	41.96	41.0
PGSC0003DMT400022948	Potato	mitochondrion	39.61	40.24
Os01t0143700-00	Rice	mitochondrion	38.82	38.22
HORVU3Hr1G011490.1	Barley	cytosol	18.04	34.59
EES00333	Sorghum	plastid	36.08	33.82
EES19636	Sorghum	mitochondrion	32.55	32.42
Os01t0143800-01	Rice	plastid	34.9	32.36
Os05t0456000-01	Rice	mitochondrion	32.16	31.78
HORVU1Hr1G072660.2	Barley	mitochondrion	31.76	31.64
Zm00001d008610_P001	Maize	plastid	33.73	31.39
TraesCS3B01G072200.1	Wheat	plastid	32.94	31.11
TraesCS3D01G059900.1	Wheat	plastid	32.55	30.74
TraesCS1D01G281100.1	Wheat	mitochondrion	30.2	30.56
TraesCS3A01G059600.1	Wheat	plastid	32.55	30.51
TraesCS3B01G072000.1	Wheat	mitochondrion	32.16	30.37
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	33.33	30.36
TraesCS1B01G291000.1	Wheat	mitochondrion	30.2	29.62
TraesCS3D01G059800.1	Wheat	mitochondrion	33.73	29.25
TraesCS3D01G059700.1	Wheat	mitochondrion	31.76	28.83
HORVU3Hr1G011560.1	Barley	plastid	32.55	28.82
PGSC0003DMT400036809	Potato	mitochondrion	24.71	27.39
TraesCS3D01G059600.1	Wheat	mitochondrion	27.84	24.48
HORVU3Hr1G011580.1	Barley	mitochondrion	15.69	24.39
TraesCS3D01G059500.1	Wheat	mitochondrion	29.41	24.19
TraesCS3B01G071900.1	Wheat	mitochondrion	28.63	23.55
PGSC0003DMT400067216	Potato	mitochondrion	21.57	23.31
HORVU3Hr1G011510.1	Barley	plastid	27.06	17.04

Protein Annotations

EnsemblPlants:PGSC0003DMT400055876	EnsemblPlantsGene:PGSC0003DMG400021701	EntrezGene:102592862	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	PGSC:PGSC0003DMG400021701	RefSeq:XP_006361962.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI000295D070	UniProt:M1BYP7	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021701]

Coordinates

chr3:-:33474460..33476134

Molecular Weight (calculated)

28933.6 Da

IEP (calculated)

4.605

GRAVY (calculated)

-0.632

Length

255 amino acids

Sequence
(BLAST)

001: MAVTNIIRRT VPLAARVICR TQSYHHRSSA LLSTVVNRSA ASRNFFRSSA PSTLHFYSTK RPSSDESLLK VLQSEIQCVE ESDVQDEVDE APEGFPFEIE
101: DHPGQQTITL TREYQGESIN VEVHMPDLVT GDEDENDNDR DHPDNEGANQ SQIPLVVRVS KKNGPSLEFG ITSFADEIAI DTLSIKDPNV AEDQIAYEGP
201: DFTDLDENLQ KAFHKYLEIR GIKPSTTNFL HEYMINKDGR EYKMWLKNLK KFIEA

Best Arabidopsis Sequence Match ( AT2G39795.1 )
(BLAST)

001: MALAWCVVRR SASKFASVYG GRVRSISAVA NRASLARNPS SIRPFVSRAL NYSTAIDRIS SEQTLIRVID SEINSALQSD NIDSDEEMTP GSFPFRIEDK
101: PGNQNVTLTR DYNGEHIKVV VSMPSLVSDE NDDDDDDDEG PSNESSIPLV VTVTKKSGLT LEFSCMAFPD EIAIDALSVK HPGDSLEDQL ANEGPDFEDL
201: DENLKKTFYK FLEIRGVKAS TTNFLHEYMT RKVNREYFLW LKNVKEFMEQ

Arabidopsis Description

Uncharacterized protein At2g39795, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W487]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.