Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G011470.3 | Barley | mitochondrion, plastid | 97.74 | 46.43 |
| TraesCS3D01G059800.1 | Wheat | mitochondrion | 84.21 | 38.1 |
| HORVU0Hr1G006190.1 | Barley | cytosol | 42.11 | 31.46 |
| CDY38743 | Canola | cytosol | 30.08 | 26.14 |
| HORVU3Hr1G011460.1 | Barley | mitochondrion | 42.11 | 22.05 |
| Os01t0143700-00 | Rice | mitochondrion | 42.11 | 21.62 |
| VIT_13s0019g02350.t01 | Wine grape | mitochondrion | 39.1 | 20.55 |
| KRH49169 | Soybean | endoplasmic reticulum | 39.1 | 20.55 |
| AT3G55605.1 | Thale cress | mitochondrion | 39.85 | 20.54 |
| Bra029083.1-P | Field mustard | mitochondrion | 29.32 | 20.53 |
| KRH00042 | Soybean | nucleus | 39.1 | 20.47 |
| Os01t0143300-01 | Rice | mitochondrion | 40.6 | 20.45 |
| CDX70103 | Canola | mitochondrion | 39.1 | 20.39 |
| Bra009157.1-P | Field mustard | mitochondrion | 38.35 | 20.32 |
| CDX98894 | Canola | mitochondrion | 38.35 | 19.77 |
| Bra014733.1-P | Field mustard | mitochondrion | 38.35 | 19.69 |
| CDX76083 | Canola | mitochondrion | 38.35 | 19.62 |
| Bra005873.1-P | Field mustard | mitochondrion | 38.35 | 19.54 |
| CDY11346 | Canola | mitochondrion | 38.35 | 19.54 |
| CDY65769 | Canola | mitochondrion, plastid | 37.59 | 19.3 |
| EES00334 | Sorghum | mitochondrion, plastid | 38.35 | 19.17 |
| KRH15056 | Soybean | mitochondrion | 36.09 | 18.97 |
| CDX80981 | Canola | mitochondrion | 36.84 | 18.92 |
| AT5G05990.1 | Thale cress | mitochondrion | 36.84 | 18.92 |
| KRH73081 | Soybean | mitochondrion | 35.34 | 18.58 |
| Solyc03g079930.2.1 | Tomato | plastid | 35.34 | 18.22 |
| PGSC0003DMT400055876 | Potato | mitochondrion, plastid | 34.59 | 18.04 |
| CDY47064 | Canola | plastid | 33.08 | 17.89 |
| GSMUA_Achr4P16890_001 | Banana | mitochondrion | 35.34 | 17.87 |
| CDY38740 | Canola | plastid | 32.33 | 17.77 |
| Bra029081.1-P | Field mustard | plastid | 30.08 | 17.47 |
| CDY20481 | Canola | mitochondrion | 32.33 | 17.34 |
| Bra005013.1-P | Field mustard | mitochondrion | 32.33 | 17.34 |
| CDX74831 | Canola | mitochondrion | 32.33 | 17.27 |
| AT5G02050.1 | Thale cress | mitochondrion, plastid | 34.59 | 17.23 |
| Zm00001d039883_P001 | Maize | mitochondrion | 32.33 | 17.0 |
| CDY55117 | Canola | mitochondrion, plastid | 33.08 | 16.99 |
| Bra005705.1-P | Field mustard | mitochondrion, plastid | 33.08 | 16.99 |
| CDX80800 | Canola | mitochondrion | 33.08 | 16.99 |
| AT2G39790.1 | Thale cress | mitochondrion, plastid | 30.08 | 16.67 |
| AT2G39795.1 | Thale cress | mitochondrion | 30.83 | 16.4 |
| PGSC0003DMT400022948 | Potato | mitochondrion | 30.83 | 16.33 |
| CDY47065 | Canola | plastid | 16.54 | 15.6 |
| HORVU7Hr1G046980.1 | Barley | mitochondrion | 30.08 | 15.27 |
| HORVU3Hr1G085260.1 | Barley | cytosol | 18.05 | 15.19 |
| CDY70180 | Canola | plastid | 29.32 | 15.06 |
| CDY43064 | Canola | plastid | 27.82 | 15.04 |
| Bra029050.1-P | Field mustard | plastid | 27.82 | 15.04 |
| Solyc09g011250.2.1 | Tomato | mitochondrion | 27.82 | 14.74 |
| CDY70179 | Canola | plastid | 27.07 | 14.63 |
| CDY43065 | Canola | plastid | 28.57 | 14.5 |
| Bra029051.1-P | Field mustard | plastid | 28.57 | 14.5 |
| HORVU2Hr1G113990.2 | Barley | plastid | 19.55 | 13.98 |
| HORVU1Hr1G072660.2 | Barley | mitochondrion | 24.81 | 12.89 |
| HORVU3Hr1G011560.1 | Barley | plastid | 27.82 | 12.85 |
| HORVU3Hr1G011510.1 | Barley | plastid | 30.83 | 10.12 |
| HORVU5Hr1G088460.2 | Barley | mitochondrion | 10.53 | 5.09 |
| Bra029082.1-P | Field mustard | plastid | 5.26 | 4.27 |
| HORVU3Hr1G011580.1 | Barley | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G011490.1 | EnsemblPlantsGene:HORVU3Hr1G011490 | Gene3D:3.10.280.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005759 | InterPro:IPR036561 | InterPro:MAM33 | InterPro:MAM33_sf |
| PANTHER:PTHR10826 | PANTHER:PTHR10826:SF12 | PFAM:PF02330 | SUPFAM:SSF54529 | UniParc:UPI000B465C81 | UniProt:A0A287K3Q8 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:24834923..24835823
Molecular Weight (calculated)
15361.1 Da
IEP (calculated)
5.823
GRAVY (calculated)
-0.706
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: EEYSIPVRVT VSKADGSSLE FTCTANPDNI VIETLFMRRN KSSGAEDAVA SEGKEHDLGL LDDEGPHFHE LDKNLQEAFH QYLEVRGITP MTAKLLREHM
101: MSEDSHLSPK EKSDHRRRHL LWLMKLWDFV KKD
101: MSEDSHLSPK EKSDHRRRHL LWLMKLWDFV KKD
001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE
Arabidopsis Description
At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.