Factsheet for Bra029083.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38740	Canola	plastid	60.53	47.52
Bra029081.1-P	Field mustard	plastid	45.79	37.99
HORVU0Hr1G006190.1	Barley	cytosol	30.53	32.58
Bra029050.1-P	Field mustard	plastid	38.95	30.08
Bra029051.1-P	Field mustard	plastid	40.53	29.39
HORVU3Hr1G011490.1	Barley	cytosol	20.53	29.32
Bra005705.1-P	Field mustard	mitochondrion, plastid	38.95	28.57
AT5G02050.1	Thale cress	mitochondrion, plastid	38.95	27.72
KRH00042	Soybean	nucleus	36.84	27.56
KRH49169	Soybean	endoplasmic reticulum	36.32	27.27
TraesCS3A01G059200.1	Wheat	mitochondrion	34.74	25.48
Os01t0143300-01	Rice	mitochondrion	34.74	25.0
HORVU3Hr1G011460.1	Barley	mitochondrion	33.16	24.8
TraesCS3B01G071700.1	Wheat	mitochondrion	33.68	24.71
GSMUA_Achr4P16890_001	Banana	mitochondrion	33.68	24.33
Bra005013.1-P	Field mustard	mitochondrion	30.53	23.39
EES00334	Sorghum	mitochondrion, plastid	32.63	23.31
Os01t0143700-00	Rice	mitochondrion	31.58	23.17
Bra009157.1-P	Field mustard	mitochondrion	30.0	22.71
Bra014733.1-P	Field mustard	mitochondrion	30.53	22.39
Zm00001d039883_P001	Maize	mitochondrion	29.47	22.13
Bra005873.1-P	Field mustard	mitochondrion	29.47	21.46
TraesCS3A01G059600.1	Wheat	plastid	30.0	20.96
TraesCS3D01G059900.1	Wheat	plastid	27.89	19.63
TraesCS3B01G072200.1	Wheat	plastid	27.89	19.63
PGSC0003DMT400022948	Potato	mitochondrion	25.79	19.52
EES00333	Sorghum	plastid	27.89	19.49
HORVU3Hr1G011560.1	Barley	plastid	29.47	19.44
Zm00001d008610_P001	Maize	plastid	27.89	19.34
Os01t0143800-01	Rice	plastid	27.89	19.27
Solyc09g011250.2.1	Tomato	mitochondrion	25.26	19.12
Bra035158.1-P	Field mustard	mitochondrion	24.21	19.01
Bra026096.1-P	Field mustard	mitochondrion	23.68	18.59
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	26.32	17.86
HORVU3Hr1G085260.1	Barley	cytosol	14.21	17.09
Bra023971.1-P	Field mustard	plastid	21.58	16.33
TraesCS3D01G059800.1	Wheat	mitochondrion	25.26	16.33
HORVU1Hr1G072660.2	Barley	mitochondrion	21.58	16.02
TraesCS3D01G059700.1	Wheat	mitochondrion	23.16	15.66
TraesCS3B01G072000.1	Wheat	mitochondrion	22.11	15.56
TraesCS3D01G059600.1	Wheat	mitochondrion	23.68	15.52
EES19636	Sorghum	mitochondrion	20.0	14.84
TraesCS3B01G071900.1	Wheat	mitochondrion	24.21	14.84
Os05t0456000-01	Rice	mitochondrion	20.0	14.73
Bra029082.1-P	Field mustard	plastid	12.63	14.63
TraesCS3D01G059500.1	Wheat	mitochondrion	23.68	14.52
TraesCS1D01G281100.1	Wheat	mitochondrion	18.95	14.29
TraesCS1B01G291000.1	Wheat	mitochondrion	19.47	14.23
HORVU3Hr1G011510.1	Barley	plastid	20.53	9.63
HORVU3Hr1G011580.1	Barley	mitochondrion	5.79	6.71

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.1	EnsemblPlantsGene:Bra029083	EnsemblPlants:Bra029083.1	EnsemblPlants:Bra029083.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561
UniProt:M4EJW6	InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12
SUPFAM:SSF54529	UniParc:UPI000253FFEA	:	:	:	:

Description

AT5G02050 (E=1e-029) | mitochondrial glycoprotein family protein / MAM33 family protein

Coordinates

chrA03:+:6279271..6279937

Molecular Weight (calculated)

22277.4 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.512

Length

190 amino acids

Sequence
(BLAST)

001: MSSEVRRYIP TNFRRLQRLY VLSECRRKVV GIFRRAIFPL KFVGNGRRNS DDFKFFVFVG NWSEIRHKRP TNFNPSEPPS EFGVFSCSDV SKDDDGLCLE
101: FGVNAFADEI VIDSLVVQQP HEPKYPYQGP DFDDLDENLQ RAVHKFLEIR GINLTLTNFW ADYMVNKDKR SHLQWLKDVK SFVLTSENSQ

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.