Factsheet for Bra005705.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55117	Canola	mitochondrion, plastid	99.61	99.61
AT5G02050.1	Thale cress	mitochondrion, plastid	80.69	78.28
Bra029081.1-P	Field mustard	plastid	42.08	47.6
KRH49169	Soybean	endoplasmic reticulum	46.33	47.43
KRH00042	Soybean	nucleus	45.56	46.46
Bra029051.1-P	Field mustard	plastid	45.56	45.04
HORVU0Hr1G006190.1	Barley	cytosol	30.89	44.94
Bra029050.1-P	Field mustard	plastid	42.08	44.31
GSMUA_Achr4P16890_001	Banana	mitochondrion	43.24	42.59
HORVU3Hr1G011460.1	Barley	mitochondrion	38.22	38.98
Bra029083.1-P	Field mustard	mitochondrion	28.57	38.95
Bra005013.1-P	Field mustard	mitochondrion	37.07	38.71
TraesCS3A01G059200.1	Wheat	mitochondrion	38.61	38.61
TraesCS3B01G071700.1	Wheat	mitochondrion	38.22	38.22
Bra014733.1-P	Field mustard	mitochondrion	38.22	38.22
Os01t0143300-01	Rice	mitochondrion	37.07	36.36
Bra009157.1-P	Field mustard	mitochondrion	35.14	36.26
EES00334	Sorghum	mitochondrion, plastid	37.07	36.09
Zm00001d039883_P001	Maize	mitochondrion	35.14	35.97
Bra005873.1-P	Field mustard	mitochondrion	35.14	34.87
PGSC0003DMT400022948	Potato	mitochondrion	32.82	33.86
Bra029082.1-P	Field mustard	plastid	21.24	33.54
HORVU3Hr1G011490.1	Barley	cytosol	16.99	33.08
Solyc09g011250.2.1	Tomato	mitochondrion	32.05	33.07
Os01t0143700-00	Rice	mitochondrion	32.43	32.43
HORVU1Hr1G072660.2	Barley	mitochondrion	31.66	32.03
TraesCS1D01G281100.1	Wheat	mitochondrion	30.12	30.95
TraesCS1B01G291000.1	Wheat	mitochondrion	30.5	30.38
HORVU3Hr1G085260.1	Barley	cytosol	18.15	29.75
Os05t0456000-01	Rice	mitochondrion	29.34	29.46
Bra035158.1-P	Field mustard	mitochondrion	27.03	28.93
Bra026096.1-P	Field mustard	mitochondrion	26.64	28.51
Zm00001d008610_P001	Maize	plastid	29.34	27.74
TraesCS3A01G059600.1	Wheat	plastid	28.96	27.57
TraesCS3B01G072200.1	Wheat	plastid	28.19	27.04
Os01t0143800-01	Rice	plastid	28.57	26.91
EES00333	Sorghum	plastid	28.19	26.84
TraesCS3D01G059900.1	Wheat	plastid	27.8	26.67
EES19636	Sorghum	mitochondrion	26.25	26.56
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	27.8	25.71
HORVU3Hr1G011560.1	Barley	plastid	28.19	25.35
TraesCS3D01G059800.1	Wheat	mitochondrion	28.57	25.17
TraesCS3B01G072000.1	Wheat	mitochondrion	25.48	24.44
TraesCS3D01G059700.1	Wheat	mitochondrion	26.25	24.2
TraesCS3D01G059600.1	Wheat	mitochondrion	26.64	23.79
TraesCS3B01G071900.1	Wheat	mitochondrion	27.8	23.23
TraesCS3D01G059500.1	Wheat	mitochondrion	27.41	22.9
Bra023971.1-P	Field mustard	plastid	22.01	22.71
HORVU3Hr1G011580.1	Barley	mitochondrion	10.81	17.07
HORVU3Hr1G011510.1	Barley	plastid	23.94	15.31

Protein Annotations

EnsemblPlants:Bra005705.1	EnsemblPlants:Bra005705.1-P	EnsemblPlantsGene:Bra005705	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	ncoils:Coil	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	SEG:seg
SUPFAM:SSF54529	UniParc:UPI000253FA39	UniProt:M4CNB7	MapMan:35.1	:	:

Description

AT5G02050 (E=1e-096) | mitochondrial glycoprotein family protein / MAM33 family protein

Coordinates

chrA03:-:208345..209338

Molecular Weight (calculated)

28925.4 Da

IEP (calculated)

4.044

GRAVY (calculated)

-0.396

Length

259 amino acids

Sequence
(BLAST)

001: MSMFRRASSS LATLAFRAVR SPVSLRNGAV SAERLFLGSR QLSRGSVFSF SRFSTESAVA KTTADENLVS VLESEIECAV NEEAPDENVM EDVPEGFPFE
101: IVDTPGERTL LLQRKFEDET IQVEVDSCAT YDDDEEEAEQ AEANDDEDEE NSVKLRIPMV VSVAKGDGVC LEFGVSAYAD EIVIDSLSIK HPQGSENELA
201: YEGPDFDDLD ENLQKAFHRF LEIRGIKPSF TGFLADYVAN KDSREYLQWL KDVKSFVEK

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.