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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • extracellular 2
  • golgi 2
  • plasma membrane 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plastid 2
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02050.1 HORVU6Hr1G077710.3 AT4G25200.1 21798944
AT5G02050.1 HORVU7Hr1G036470.3 AT4G25200.1 21798944
AT5G02050.1 HORVU7Hr1G036500.7 AT4G25200.1 21798944
AT5G02050.1 HORVU7Hr1G036540.3 AT4G25200.1 21798944
AT5G02050.1 HORVU7Hr1G036570.2 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G281100.1 Wheat mitochondrion 82.42 83.73
TraesCS1B01G291000.1 Wheat mitochondrion 82.42 81.15
Os05t0456000-01 Rice mitochondrion 60.55 60.08
EES19636 Sorghum mitochondrion 59.77 59.77
HORVU0Hr1G006190.1 Barley cytosol 27.73 39.89
HORVU3Hr1G011460.1 Barley mitochondrion 35.55 35.83
GSMUA_Achr4P16890_001 Banana mitochondrion 35.94 34.98
KRH73081 Soybean mitochondrion 32.81 33.2
KRH15056 Soybean mitochondrion 32.81 33.2
VIT_13s0019g02350.t01 Wine grape mitochondrion 32.42 32.81
AT5G02050.1 Thale cress mitochondrion, plastid 33.98 32.58
PGSC0003DMT400055876 Potato mitochondrion, plastid 31.64 31.76
CDY55117 Canola mitochondrion, plastid 32.03 31.66
CDX80800 Canola mitochondrion 32.03 31.66
Bra005705.1-P Field mustard mitochondrion, plastid 32.03 31.66
Solyc03g079930.2.1 Tomato plastid 30.86 30.62
CDX70103 Canola mitochondrion 29.69 29.8
CDY11346 Canola mitochondrion 29.69 29.12
Bra009157.1-P Field mustard mitochondrion 28.52 29.08
Bra005873.1-P Field mustard mitochondrion 29.3 28.74
AT2G39795.1 Thale cress mitochondrion 27.73 28.4
KRH00042 Soybean nucleus 28.12 28.35
CDX98894 Canola mitochondrion 28.52 28.29
Bra005013.1-P Field mustard mitochondrion 27.34 28.23
AT5G05990.1 Thale cress mitochondrion 28.52 28.19
CDX80981 Canola mitochondrion 28.52 28.19
CDX74831 Canola mitochondrion 27.34 28.11
KRH49169 Soybean endoplasmic reticulum 27.73 28.06
CDY20481 Canola mitochondrion 26.95 27.82
AT3G55605.1 Thale cress mitochondrion 27.34 27.13
CDY38743 Canola cytosol 16.02 26.8
Solyc09g011250.2.1 Tomato mitochondrion 25.78 26.29
AT2G39790.1 Thale cress mitochondrion, plastid 24.61 26.25
CDY70179 Canola plastid 25.0 26.02
HORVU3Hr1G085260.1 Barley cytosol 16.02 25.95
PGSC0003DMT400022948 Potato mitochondrion 25.39 25.9
Bra029050.1-P Field mustard plastid 24.61 25.61
CDY43064 Canola plastid 24.61 25.61
Bra014733.1-P Field mustard mitochondrion 25.78 25.48
CDX76083 Canola mitochondrion 25.78 25.38
HORVU7Hr1G046980.1 Barley mitochondrion 25.78 25.19
CDY70180 Canola plastid 25.39 25.1
CDY47065 Canola plastid 13.67 24.82
HORVU3Hr1G011490.1 Barley cytosol 12.89 24.81
Bra029051.1-P Field mustard plastid 25.39 24.81
CDY43065 Canola plastid 25.39 24.81
CDY38740 Canola plastid 23.44 24.79
CDY65769 Canola mitochondrion, plastid 25.0 24.71
CDY47064 Canola plastid 23.44 24.39
Bra029081.1-P Field mustard plastid 21.48 24.02
HORVU3Hr1G011470.3 Barley mitochondrion, plastid 23.83 21.79
Bra029083.1-P Field mustard mitochondrion 16.02 21.58
HORVU3Hr1G011560.1 Barley plastid 23.83 21.18
Bra029082.1-P Field mustard plastid 12.11 18.9
HORVU3Hr1G011580.1 Barley mitochondrion 11.33 17.68
HORVU2Hr1G113990.2 Barley plastid 12.11 16.67
HORVU3Hr1G011510.1 Barley plastid 26.17 16.54
HORVU5Hr1G088460.2 Barley mitochondrion 12.89 12.0
Protein Annotations
Gene3D:3.10.280.10MapMan:35.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005759EnsemblPlantsGene:HORVU1Hr1G072660EnsemblPlants:HORVU1Hr1G072660.2InterPro:IPR036561UniProt:M0YHS2
InterPro:MAM33InterPro:MAM33_sfPFAM:PF02330PANTHER:PTHR10826PANTHER:PTHR10826:SF10SUPFAM:SSF54529
UniParc:UPI0002961929SEG:seg::::
Description
No Description!
Coordinates
chrchr1H:-:498571915..498573497
Molecular Weight (calculated)
27503.5 Da
IEP (calculated)
5.201
GRAVY (calculated)
-0.260
Length
256 amino acids
Sequence
(BLAST)
001: MAISSALRRA PMAAAAARAL LAALGSPRSG RVGSPHHGAA PVAPLSSLSA PQPSAVAEAQ LLRVITYEIS CAQLDCRNIN WAKELGEGFP FEIKDKEGTK
101: RITLTRTHQE ERIEVEALLP SPVEDGEQEE EDQAGDGGKQ SHAGGGGVPN RYCIPLTVRI RKGAADSCLE ISCCSYPEEF VVESLEFGSS DESAGSLSGG
201: TAFSDMSEEL QKALHLYLGS RGISTNFTDF LHAYMINKEC YEYLSWLRKL KGLVKG
Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)
001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK
Arabidopsis Description
At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.