CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009157.1-P	Field mustard	mitochondrion	96.47	98.01
CDX98894	Canola	mitochondrion	96.08	94.96
CDY11346	Canola	mitochondrion	89.02	86.97
CDX80981	Canola	mitochondrion	86.67	85.33
AT5G05990.1	Thale cress	mitochondrion	79.61	78.38
HORVU0Hr1G006190.1	Barley	cytosol	38.04	54.49
HORVU3Hr1G011460.1	Barley	mitochondrion	48.63	48.82
TraesCS3B01G071700.1	Wheat	mitochondrion	48.24	47.49
TraesCS3A01G059200.1	Wheat	mitochondrion	48.24	47.49
Os01t0143300-01	Rice	mitochondrion	47.45	45.83
VIT_13s0019g02350.t01	Wine grape	mitochondrion	45.1	45.45
EES00334	Sorghum	mitochondrion, plastid	47.06	45.11
Zm00001d039883_P001	Maize	mitochondrion	44.31	44.66
Solyc03g079930.2.1	Tomato	plastid	45.1	44.57
GSMUA_Achr4P16890_001	Banana	mitochondrion	45.88	44.49
CDY20481	Canola	mitochondrion	43.14	44.35
CDX74831	Canola	mitochondrion	42.75	43.78
KRH73081	Soybean	mitochondrion	43.14	43.48
PGSC0003DMT400055876	Potato	mitochondrion, plastid	42.35	42.35
CDX76083	Canola	mitochondrion	43.14	42.31
KRH15056	Soybean	mitochondrion	41.96	42.29
CDY65769	Canola	mitochondrion, plastid	42.35	41.7
HORVU3Hr1G085260.1	Barley	cytosol	24.31	39.24
HORVU3Hr1G011490.1	Barley	cytosol	20.39	39.1
Os01t0143700-00	Rice	mitochondrion	37.65	37.07
CDY55117	Canola	mitochondrion, plastid	36.86	36.29
CDX80800	Canola	mitochondrion	36.86	36.29
CDY38743	Canola	cytosol	21.18	35.29
EES00333	Sorghum	plastid	34.12	31.99
Os01t0143800-01	Rice	plastid	34.12	31.64
Zm00001d008610_P001	Maize	plastid	33.73	31.39
CDY47064	Canola	plastid	29.8	30.89
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	33.73	30.71
CDY38740	Canola	plastid	29.02	30.58
CDY70180	Canola	plastid	30.98	30.5
TraesCS1D01G281100.1	Wheat	mitochondrion	29.8	30.16
TraesCS3A01G059600.1	Wheat	plastid	31.76	29.78
HORVU1Hr1G072660.2	Barley	mitochondrion	29.8	29.69
CDY43065	Canola	plastid	29.8	29.01
TraesCS3B01G072200.1	Wheat	plastid	30.59	28.89
TraesCS3D01G059900.1	Wheat	plastid	29.8	28.15
TraesCS3B01G072000.1	Wheat	mitochondrion	29.8	28.15
HORVU3Hr1G011560.1	Barley	plastid	31.76	28.12
TraesCS1B01G291000.1	Wheat	mitochondrion	28.63	28.08
EES19636	Sorghum	mitochondrion	27.84	27.73
CDX68804	Canola	cytosol	12.94	27.73
CDY43064	Canola	plastid	26.67	27.64
CDY70179	Canola	plastid	26.27	27.24
CDY47065	Canola	plastid	14.9	26.95
TraesCS3D01G059700.1	Wheat	mitochondrion	29.41	26.69
TraesCS3D01G059800.1	Wheat	mitochondrion	30.59	26.53
Os05t0456000-01	Rice	mitochondrion	26.67	26.36
CDY39948	Canola	mitochondrion	23.53	24.79
CDY33373	Canola	mitochondrion	23.53	24.69
CDX87337	Canola	mitochondrion	23.14	24.38
CDY35045	Canola	mitochondrion	23.14	24.38
TraesCS3B01G071900.1	Wheat	mitochondrion	29.41	24.19
TraesCS3D01G059500.1	Wheat	mitochondrion	28.63	23.55
CDY13466	Canola	mitochondrion	21.96	22.86
TraesCS3D01G059600.1	Wheat	mitochondrion	25.49	22.41
CDX72338	Canola	plastid	21.96	22.4
HORVU3Hr1G011580.1	Barley	mitochondrion	13.33	20.73
HORVU3Hr1G011510.1	Barley	plastid	27.84	17.53

Protein Annotations

EnsemblPlants:CDX70103	EnsemblPlantsGene:GSBRNA2T00136212001	Gene3D:3.10.280.10	GO:A0A078C563	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33
InterPro:MAM33_sf	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12	PFAM:PF02330	ProteinID:CDX70103	ProteinID:CDX70103.1
SEG:seg	SUPFAM:SSF54529	UniParc:UPI0004EE86EB	MapMan:35.1	:	:

Description

BnaA10g24520D

Coordinates

chrLK031790:+:3162058..3162970

Molecular Weight (calculated)

28988.3 Da

IEP (calculated)

6.005

GRAVY (calculated)

-0.682

Length

255 amino acids

Sequence
(BLAST)

001: MASLVRRAAS RLVGSCGKSR FSVNSLGAHG RMRYLTPSIS RNNPFSTSAR KKASSNDPLL RVIETEIGFA EQADDYDRVE ETPNGFPFKM EDKPGTKVVT
101: LTRDYKGESV VVEVHMTNLV TGDKGDDEES DEESEEEEEH EDKPEKPKQS NVPLLVTLSK KTGPSLEFRC TAFPDKIVIK DLWVTFPDDP SKDELAYEGP
201: SFRVLDEKLR KAFHRYIEIR GITPGMINFL HEYMINKDSK EHLLWLKTLK NFVKS

Best Arabidopsis Sequence Match ( AT5G05990.1 )
(BLAST)

001: MATLVRRAAS RFVGSYWKNR SFVYSLLDQS ASGRRRHLTP SVDRNVPFTT STKKRASPTD PLLRIIEEEI GYAEKADDYH RVEETPSGFP FEMEDKPGGK
101: IVTLTREYEG ETVKVEVHMT NLVTGDKEDD EDDEEEAENE EDEDEDKPLK PKQSNVPLLV TLSKKTGPSL EFRCTAFPDR IAIKDMWVTF PDDPSKDELA
201: YEGPSFRVLD EKLRKAFHRY IEIRGIKPSM INFLHEYMIN KDSREHLLWL KSLKNFVKY

Arabidopsis Description

AT5g05990/K18J17_19 [Source:UniProtKB/TrEMBL;Acc:Q9FI87]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.