Factsheet for HORVU3Hr1G011560.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT5G02050.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT5G02050.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT5G02050.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT5G02050.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G072200.1	Wheat	plastid	87.5	93.33
TraesCS3A01G059600.1	Wheat	plastid	85.42	90.44
TraesCS3D01G059900.1	Wheat	plastid	84.03	89.63
Os01t0143800-01	Rice	plastid	62.15	65.09
EES00333	Sorghum	plastid	59.38	62.87
Zm00001d008610_P001	Maize	plastid	59.38	62.41
HORVU0Hr1G006190.1	Barley	cytosol	25.35	41.01
HORVU3Hr1G011460.1	Barley	mitochondrion	31.94	36.22
GSMUA_Achr4P16890_001	Banana	mitochondrion	32.64	35.74
Bra005013.1-P	Field mustard	mitochondrion	29.86	34.68
Solyc03g079930.2.1	Tomato	plastid	30.9	34.5
VIT_13s0019g02350.t01	Wine grape	mitochondrion	30.21	34.39
CDY20481	Canola	mitochondrion	29.51	34.27
CDX74831	Canola	mitochondrion	29.51	34.14
AT2G39795.1	Thale cress	mitochondrion	28.47	32.8
PGSC0003DMT400055876	Potato	mitochondrion, plastid	28.82	32.55
CDY38743	Canola	cytosol	17.01	32.03
KRH15056	Soybean	mitochondrion	28.12	32.02
Bra009157.1-P	Field mustard	mitochondrion	27.78	31.87
AT3G55605.1	Thale cress	mitochondrion	28.47	31.78
CDX70103	Canola	mitochondrion	28.12	31.76
Bra014733.1-P	Field mustard	mitochondrion	28.47	31.66
KRH73081	Soybean	mitochondrion	27.78	31.62
KRH49169	Soybean	endoplasmic reticulum	27.78	31.62
CDX76083	Canola	mitochondrion	28.47	31.54
KRH00042	Soybean	nucleus	27.78	31.5
CDX98894	Canola	mitochondrion	28.12	31.4
PGSC0003DMT400022948	Potato	mitochondrion	27.08	31.08
CDY65769	Canola	mitochondrion, plastid	27.43	30.5
HORVU3Hr1G085260.1	Barley	cytosol	16.67	30.38
Bra005873.1-P	Field mustard	mitochondrion	27.43	30.27
CDY11346	Canola	mitochondrion	27.43	30.27
AT5G05990.1	Thale cress	mitochondrion	26.74	29.73
Bra029083.1-P	Field mustard	mitochondrion	19.44	29.47
Solyc09g011250.2.1	Tomato	mitochondrion	25.35	29.08
HORVU7Hr1G046980.1	Barley	mitochondrion	26.39	29.01
AT5G02050.1	Thale cress	mitochondrion, plastid	26.39	28.46
Bra005705.1-P	Field mustard	mitochondrion, plastid	25.35	28.19
CDY55117	Canola	mitochondrion, plastid	25.35	28.19
Bra029081.1-P	Field mustard	plastid	22.22	27.95
HORVU3Hr1G011490.1	Barley	cytosol	12.85	27.82
CDX80800	Canola	mitochondrion	25.0	27.8
CDX80981	Canola	mitochondrion	24.65	27.41
CDY38740	Canola	plastid	22.57	26.86
CDY70179	Canola	plastid	22.22	26.02
CDY47064	Canola	plastid	22.22	26.02
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	24.65	25.36
Bra029050.1-P	Field mustard	plastid	21.53	25.2
CDY43064	Canola	plastid	21.53	25.2
CDY70180	Canola	plastid	22.57	25.1
CDY43065	Canola	plastid	22.22	24.43
Bra029051.1-P	Field mustard	plastid	22.22	24.43
AT2G39790.1	Thale cress	mitochondrion, plastid	20.14	24.17
HORVU1Hr1G072660.2	Barley	mitochondrion	21.18	23.83
HORVU3Hr1G011580.1	Barley	mitochondrion	13.54	23.78
CDY47065	Canola	plastid	11.46	23.4
HORVU3Hr1G011510.1	Barley	plastid	27.43	19.51
Bra029082.1-P	Field mustard	plastid	9.38	16.46
HORVU2Hr1G113990.2	Barley	plastid	8.33	12.9
HORVU5Hr1G088460.2	Barley	mitochondrion	11.81	12.36

Protein Annotations

EnsemblPlants:HORVU3Hr1G011560.1	EnsemblPlantsGene:HORVU3Hr1G011560	Gene3D:3.10.280.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561	InterPro:MAM33	InterPro:MAM33_sf
PANTHER:PTHR10826	PANTHER:PTHR10826:SF15	PFAM:PF02330	SEG:seg	SUPFAM:SSF54529	UniParc:UPI000B46BAE4
UniProt:A0A287K3N5	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:24949143..24952428

Molecular Weight (calculated)

31488.2 Da

IEP (calculated)

4.338

GRAVY (calculated)

-0.477

Length

288 amino acids

Sequence
(BLAST)

001: KTPPRLIPFP IPTPTSHSAM ASFVSASAAS STAGALLRRA PFVPRGGLVG AWASPARRPL RAAAAQGSAN SAPVMMESKV KKRNKKGSGA GGLPAAIDLE
101: IREAEQYLAT DGQEPTPEDF PFEMVDEEGM SVVILKRDYK DEKIEVIVSM PNMEGDPEFD EDDEADGEDA AKDDDDEDEG GEDSSLAMKV IVSKGSGPNL
201: EFTCTAFREE ITIDDMMIAE KTEPDAEKFP FEGPEFTELP PNVQKGLFKF LEVRGVTLTT TNFMHDYMIT KQTKEYVRWM TKLKGLVQ

Best Arabidopsis Sequence Match ( AT3G55605.1 )
(BLAST)

001: MGFALCIRRS ASTLASVCGR VARAQAVSAI VNRSSLVPKP SLLRPFVSRG FPYSTATEPL KSDQTLIQVI DSEIKDSFEA DDHDADEETI DSSDFPFKIE
101: DNPGHRTVTL TREYNGEQIK VEVSMPGLAM DENEDDVDDD EDGDGRHEKS NESSIPLVVT VTKKSGLSLE FSCTAFPDEI VIDGLSVNRP DDSSEEQLTY
201: DGPDFQELDE NMRKSFHKFL ETRGIKASAT DFLYEYMMKK DSREYLLWLK KLKTFVQE

Arabidopsis Description

At3g55605 [Source:UniProtKB/TrEMBL;Acc:Q8LCT2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.