Factsheet for Bra029082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02050.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47064	Canola	plastid	92.68	61.79
Bra029081.1-P	Field mustard	plastid	63.41	45.41
Bra029051.1-P	Field mustard	plastid	54.88	34.35
Bra029050.1-P	Field mustard	plastid	50.61	33.74
Bra005705.1-P	Field mustard	mitochondrion, plastid	33.54	21.24
AT5G02050.1	Thale cress	mitochondrion, plastid	32.32	19.85
KRH49169	Soybean	endoplasmic reticulum	28.66	18.58
KRH00042	Soybean	nucleus	28.05	18.11
Bra026096.1-P	Field mustard	mitochondrion	23.17	15.7
Zm00001d039883_P001	Maize	mitochondrion	23.78	15.41
EES00334	Sorghum	mitochondrion, plastid	21.95	13.53
GSMUA_Achr4P16890_001	Banana	mitochondrion	21.34	13.31
Bra005013.1-P	Field mustard	mitochondrion	20.12	13.31
Os01t0143300-01	Rice	mitochondrion	21.34	13.26
PGSC0003DMT400022948	Potato	mitochondrion	20.12	13.15
TraesCS3B01G071700.1	Wheat	mitochondrion	20.73	13.13
TraesCS3A01G059200.1	Wheat	mitochondrion	20.73	13.13
Solyc09g011250.2.1	Tomato	mitochondrion	19.51	12.75
Bra029083.1-P	Field mustard	mitochondrion	14.63	12.63
HORVU3Hr1G011460.1	Barley	mitochondrion	19.51	12.6
Bra014733.1-P	Field mustard	mitochondrion	19.51	12.36
Bra005873.1-P	Field mustard	mitochondrion	19.51	12.26
HORVU1Hr1G072660.2	Barley	mitochondrion	18.9	12.11
Os05t0456000-01	Rice	mitochondrion	18.9	12.02
Bra009157.1-P	Field mustard	mitochondrion	18.29	11.95
Bra023971.1-P	Field mustard	plastid	17.68	11.55
TraesCS1D01G281100.1	Wheat	mitochondrion	17.68	11.51
EES00333	Sorghum	plastid	18.9	11.4
HORVU3Hr1G085260.1	Barley	cytosol	10.98	11.39
EES19636	Sorghum	mitochondrion	17.68	11.33
Bra035158.1-P	Field mustard	mitochondrion	16.46	11.16
HORVU3Hr1G011580.1	Barley	mitochondrion	10.98	10.98
Os01t0143700-00	Rice	mitochondrion	17.07	10.81
TraesCS1B01G291000.1	Wheat	mitochondrion	16.46	10.38
TraesCS3B01G071900.1	Wheat	mitochondrion	19.51	10.32
Os01t0143800-01	Rice	plastid	17.07	10.18
HORVU0Hr1G006190.1	Barley	cytosol	10.98	10.11
TraesCS3D01G059500.1	Wheat	mitochondrion	18.9	10.0
TraesCS3D01G059900.1	Wheat	plastid	16.46	10.0
TraesCS3A01G059600.1	Wheat	plastid	16.46	9.93
Zm00001d008610_P001	Maize	plastid	16.46	9.85
TraesCS3B01G072200.1	Wheat	plastid	15.85	9.63
HORVU3Hr1G011560.1	Barley	plastid	16.46	9.38
TraesCS3D01G059800.1	Wheat	mitochondrion	16.46	9.18
TraesCS3D01G059600.1	Wheat	mitochondrion	15.85	8.97
TraesCS3D01G059700.1	Wheat	mitochondrion	15.24	8.9
TraesCS3B01G072000.1	Wheat	mitochondrion	14.63	8.89
HORVU3Hr1G011470.3	Barley	mitochondrion, plastid	14.63	8.57
HORVU3Hr1G011510.1	Barley	plastid	18.9	7.65
HORVU3Hr1G011490.1	Barley	cytosol	4.27	5.26

Protein Annotations

Gene3D:3.10.280.10	MapMan:35.2	EnsemblPlantsGene:Bra029082	EnsemblPlants:Bra029082.1	EnsemblPlants:Bra029082.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	InterPro:IPR036561
UniProt:M4EJW5	InterPro:MAM33	InterPro:MAM33_sf	PFAM:PF02330	PANTHER:PTHR10826	PANTHER:PTHR10826:SF12
SUPFAM:SSF54529	UniParc:UPI000253FFE9	SEG:seg	:	:	:

Description

AT5G02050 (E=2e-007) | mitochondrial glycoprotein family protein / MAM33 family protein

Coordinates

chrA03:+:6276274..6276879

Molecular Weight (calculated)

18165.5 Da

IEP (calculated)

4.099

GRAVY (calculated)

-0.038

Length

164 amino acids

Sequence
(BLAST)

001: MSLFCRVSVA STLPFRAASS PPASLQTGTQ RVTFGGSHQC SRLISFSSIS AVRAITPSSN LLSLLESEIE SSVVDEDAPD NEELPEWFTF QIIDLPTERI
101: VRLIRKFDDE TIIVYIDPSA HLFDEQPKLP QDDEELLAGI PMVVDALQEN RGILMAEIVR NSSE

Best Arabidopsis Sequence Match ( AT5G02050.1 )
(BLAST)

001: MALSTVFRRA SSTVANLAFR AGRSPVSFRS GAVSVERLIR GSHQIRRGSV SSFSVSSFST ESAISKTTAD ENLVSVIESE IECAVAEEAP HDTDFLEDKP
101: EGFPFEIIDN SGERTVLLTR KFEDETIQVE VDSVASYDDE DEEEEAEPNN EEDDEDQESS GKVRVPMVVS VQKGDGVCLE FGVSAYPDEI VIDSLSIKQP
201: QGSDNDLAYE GPDFDDLDEN LQKAFHRYLE IRGIKPSFTT FLADYVANKD SREYLQWLKD LKSFVEK

Arabidopsis Description

At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.